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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92567 Canola cytosol 92.71 92.71
CDY66705 Canola cytosol 77.45 84.37
CDX70860 Canola cytosol 83.83 83.64
AT5G19000.2 Thale cress plastid 82.46 81.9
CDY58342 Canola cytosol 71.75 78.16
CDY08064 Canola cytosol 71.53 77.15
CDY05245 Canola cytosol 69.02 76.52
CDY24708 Canola cytosol 69.48 75.68
CDY02591 Canola cytosol 68.11 74.75
CDY18844 Canola cytosol 72.44 74.13
VIT_05s0020g02520.t01 Wine grape plastid 65.38 70.34
HORVU2Hr1G023850.1 Barley cytosol, plastid 61.05 68.37
GSMUA_Achr6P23740_001 Banana plastid 62.19 65.62
Zm00001d022366_P001 Maize plastid 62.41 64.93
EER99824 Sorghum plastid 62.64 64.55
GSMUA_Achr6P16160_001 Banana plastid 61.28 64.51
Zm00001d007068_P001 Maize plastid 62.41 64.32
Os07t0655300-01 Rice plastid 62.87 63.59
TraesCS2B01G159700.1 Wheat mitochondrion, plastid 61.5 63.53
TraesCS2D01G138300.1 Wheat mitochondrion, plastid 61.5 63.53
TraesCS2A01G135800.1 Wheat mitochondrion, plastid 61.5 63.53
Solyc01g080250.2.1 Tomato plastid 56.95 61.43
PGSC0003DMT400011115 Potato plastid 56.72 61.18
CDX93238 Canola cytosol 48.52 53.79
CDY07031 Canola cytosol 48.75 53.63
CDY07638 Canola cytosol 47.61 52.25
CDY61778 Canola cytosol 48.06 50.0
CDX70957 Canola plastid 45.33 48.54
CDY29955 Canola plastid 49.43 48.33
CDX88828 Canola plastid 45.1 48.29
CDY09093 Canola cytosol, plastid 38.04 45.5
CDY71585 Canola cytosol 19.13 41.58
CDY16586 Canola cytosol 15.49 39.08
CDY67137 Canola endoplasmic reticulum 30.98 38.2
CDX93236 Canola cytosol 31.66 34.07
Protein Annotations
Gene3D:1.25.40.420Gene3D:2.60.210.10Gene3D:3.30.710.10MapMan:35.1UniProt:A0A078FLE5InterPro:BPM_C
InterPro:BTB/POZ_domEnsemblPlants:CDY13941ProteinID:CDY13941ProteinID:CDY13941.1GO:GO:0003674GO:GO:0005488
GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00078426001InterPro:IPR000210InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_dom
PFAM:PF00651PFscan:PS50097PFscan:PS50144PANTHER:PTHR24411PANTHER:PTHR24411:SF37InterPro:SKP1/BTB/POZ_sf
SMART:SM00061SMART:SM00225SUPFAM:SSF49599SUPFAM:SSF54695InterPro:TRAF-likeUniParc:UPI0004EEA0F7
SEG:seg:::::
Description
BnaC09g38850DBnaC09g38850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLE5]
Coordinates
chrLK032039:+:332292..334491
Molecular Weight (calculated)
49127.9 Da
IEP (calculated)
7.286
GRAVY (calculated)
-0.127
Length
439 amino acids
Sequence
(BLAST)
001: MGTPEVSRSP TKSPLTVSTS LTETVDGFHE FKISSYSLTK GLGVGKFVAS ETFNVGDYTW AIYFYPDGKS PEDNSSYVSL FIALASEGAD VRALFELTLV
101: DQSGNGKHKV HSHFGRALES GPYTLKYRGS MWGYKRFFKK STLESSDYIK DNSLLVRCRV GVVKSCTEGQ RNYNIPVPVS NLGQQFGNLL ESGKGCDVTF
201: EVDEETFSAH KLVLAARSPV FRAQLFGPLR DRNTDRIEIE DMESPIFKVL SFWDCICLVW IFYSRMYHPG SSPGALLLLL SLLTQDKVLL HFIYWDELPD
301: MQELMGIDSK SASTLVAQHL LVVADRYALE RLKVICESRL CEGITINTAA TTLALAEQHH CFQLKAVCLK FVSLPENLKA VMQTDGFDYL KKSCPSLLTE
401: LLKYVARLGE HSVSASGYRK EMFADGCDAN GRRVKQRLH
Best Arabidopsis Sequence Match ( AT5G19000.2 )
(BLAST)
001: MGTTRVCSEV SSGSSKSLSQ SLTVSTSTTE TVNGFHEFKI CGYSLAKGVG VGKYVASDTF MVGGYSWAIY FYPDGKSPED NSSYVSLFIA LASEGADVRA
101: LFELTLVDQS GNGKHKVHSH FGRALDSGPY TLKYRGSMWG YKRFFRRSSL ESSDYLKENS LLVRCRVGVV KSVTEGPRYY NIPVPVSNLG QQLGNLLESG
201: KGCDVVFQVD GETFNAHKLV LATRSPVFNA QLFGPLGDRN TKCITIEDME APIFKVLPLT LLLIVYSRMY HPGSSPGALL LFSSLLTRDK VLLHFIYWDE
301: LPDMQELIGT DSTLASTLVA QHLLAAADRY ALERLKAICE SKLCEGVAIN TVATTLALAE QHHCLQLKAV CLKFVALPEN LKAVMQTDGF DYLKESCPSL
401: LTELLQYVAR LSEHSVIVSG HRKEIFADGC DASGRRVKPR LH
Arabidopsis Description
BPM1BPM1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFC0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.