Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017053.1-P | Field mustard | cytosol | 98.48 | 97.74 |
| CDY07031 | Canola | cytosol | 97.98 | 97.24 |
| CDY07638 | Canola | cytosol | 85.1 | 84.25 |
| AT2G39760.1 | Thale cress | cytosol | 85.1 | 82.6 |
| CDY61778 | Canola | cytosol | 84.85 | 79.62 |
| VIT_13s0019g02260.t01 | Wine grape | cytosol | 67.42 | 65.76 |
| Solyc05g052960.2.1 | Tomato | cytosol | 66.92 | 64.95 |
| PGSC0003DMT400069942 | Potato | cytosol | 66.92 | 64.95 |
| GSMUA_Achr10P... | Banana | cytosol | 30.3 | 63.49 |
| GSMUA_Achr7P10650_001 | Banana | cytosol | 64.9 | 63.46 |
| KRH31032 | Soybean | nucleus | 65.66 | 62.65 |
| KRG97837 | Soybean | cytosol | 65.4 | 62.56 |
| TraesCS2D01G266900.1 | Wheat | cytosol | 59.09 | 59.09 |
| TraesCS2A01G255800.1 | Wheat | cytosol | 59.09 | 59.09 |
| Os07t0101400-01 | Rice | cytosol | 58.59 | 58.73 |
| CDX93236 | Canola | cytosol | 58.59 | 56.86 |
| EER97813 | Sorghum | plastid | 57.58 | 56.72 |
| CDY58342 | Canola | cytosol | 56.82 | 55.83 |
| CDY66705 | Canola | cytosol | 56.57 | 55.58 |
| CDY08064 | Canola | cytosol | 56.82 | 55.28 |
| CDY05245 | Canola | cytosol | 54.55 | 54.55 |
| HORVU2Hr1G064920.1 | Barley | plastid | 58.84 | 54.19 |
| CDY24708 | Canola | cytosol | 54.8 | 53.85 |
| CDX70860 | Canola | cytosol | 56.31 | 50.68 |
| Zm00001d007888_P002 | Maize | plastid | 54.55 | 50.23 |
| CDY18844 | Canola | cytosol | 54.29 | 50.12 |
| CDX92567 | Canola | cytosol | 55.56 | 50.11 |
| CDY09093 | Canola | cytosol, plastid | 45.2 | 48.77 |
| CDX88828 | Canola | plastid | 50.25 | 48.54 |
| CDX70957 | Canola | plastid | 50.25 | 48.54 |
| CDY13941 | Canola | cytosol | 53.79 | 48.52 |
| CDY02591 | Canola | cytosol | 48.99 | 48.5 |
| CDY29955 | Canola | plastid | 53.54 | 47.22 |
| CDY71585 | Canola | cytosol | 20.2 | 39.6 |
| CDY67137 | Canola | endoplasmic reticulum | 33.59 | 37.36 |
| CDY16586 | Canola | cytosol | 15.66 | 35.63 |
Protein Annotations
| Gene3D:1.25.40.420 | Gene3D:2.60.210.10 | Gene3D:3.30.710.10 | MapMan:35.1 | InterPro:BPM_C | InterPro:BTB/POZ_dom |
| EnsemblPlants:CDX93238 | ProteinID:CDX93238 | ProteinID:CDX93238.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00155194001 | InterPro:IPR000210 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | PFAM:PF00651 |
| PFscan:PS50097 | PFscan:PS50144 | PANTHER:PTHR24411 | PANTHER:PTHR24411:SF54 | InterPro:SKP1/BTB/POZ_sf | SMART:SM00061 |
| SMART:SM00225 | SUPFAM:SSF49599 | SUPFAM:SSF54695 | InterPro:TRAF-like | UniParc:UPI0004EF2B9B | SEG:seg |
Description
BnaC04g46580D
Coordinates
chrLK031875:-:498714..501501
Molecular Weight (calculated)
43588.0 Da
IEP (calculated)
6.976
GRAVY (calculated)
-0.120
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATNSDSVS TTVMETVNGS HQFTIKGYSL AKGMSPGRYI QSDVFSVNGY DWVIYFYPDG KNPEENSTYV SLFIALASDS SDIRALFELT LMDQSGRGRH
101: KVHSHFDRAL EGGPYTLKYK GSMWGYKRFL RRTALEASDY LKDDCLIINC TVGVVRARLE GPKQFCIVPP PSNMGQGLKD LLDSELGCDI IFQVGDETYK
201: AHKLILAARS PVFRAQFYGP VGNNSVDRVV IEDIEPSIFK AMLSFIYTDV LPDVHEITGS TSTASFTNMI QHLLAAADLY DLGRLKILCE AFLCEELNVD
301: NVATTLALAD QHQFLQLKAF CLKFVASPAN LRAVMKSEGF KHLNQSCPSV LPELLNTVAA ADKSSTSSGQ SSKKRSVSSV LGCDTSATNA RQVRRT
101: KVHSHFDRAL EGGPYTLKYK GSMWGYKRFL RRTALEASDY LKDDCLIINC TVGVVRARLE GPKQFCIVPP PSNMGQGLKD LLDSELGCDI IFQVGDETYK
201: AHKLILAARS PVFRAQFYGP VGNNSVDRVV IEDIEPSIFK AMLSFIYTDV LPDVHEITGS TSTASFTNMI QHLLAAADLY DLGRLKILCE AFLCEELNVD
301: NVATTLALAD QHQFLQLKAF CLKFVASPAN LRAVMKSEGF KHLNQSCPSV LPELLNTVAA ADKSSTSSGQ SSKKRSVSSV LGCDTSATNA RQVRRT
001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
Arabidopsis Description
BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.