Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006255.1-P | Field mustard | nucleus | 95.2 | 93.82 |
| CDX70566 | Canola | nucleus | 91.88 | 88.3 |
| CDX91061 | Canola | nucleus | 73.43 | 68.62 |
| CDY70251 | Canola | nucleus | 72.69 | 67.7 |
| AT5G14440.1 | Thale cress | nucleus | 71.59 | 66.44 |
| CDX77338 | Canola | nucleus | 19.19 | 55.32 |
| PGSC0003DMT400032840 | Potato | nucleus | 44.28 | 45.45 |
| VIT_14s0066g00260.t01 | Wine grape | nucleus | 45.02 | 44.69 |
| Solyc02g093510.2.1 | Tomato | nucleus | 42.8 | 44.11 |
| KRH06355 | Soybean | nucleus | 45.76 | 43.66 |
| KRH07108 | Soybean | nucleus | 45.02 | 42.96 |
| HORVU2Hr1G082940.1 | Barley | nucleus | 30.63 | 38.43 |
| Zm00001d025694_P001 | Maize | nucleus | 37.27 | 36.86 |
| TraesCS2D01G337500.1 | Wheat | nucleus | 37.27 | 36.2 |
| TraesCS2B01G356700.2 | Wheat | nucleus | 37.27 | 35.82 |
| TraesCS2A01G325200.1 | Wheat | nucleus | 37.27 | 35.69 |
| GSMUA_Achr11P... | Banana | nucleus | 39.11 | 35.57 |
| KXG26564 | Sorghum | nucleus | 36.16 | 34.15 |
| GSMUA_Achr2P21040_001 | Banana | nucleus | 36.53 | 33.67 |
| CDY64957 | Canola | cytosol | 23.99 | 22.89 |
| CDY01087 | Canola | cytosol | 22.51 | 19.68 |
| CDY00873 | Canola | cytosol | 23.62 | 19.63 |
| CDX99929 | Canola | nucleus | 28.41 | 18.03 |
| CDY24130 | Canola | cytosol | 22.88 | 17.87 |
Protein Annotations
| EnsemblPlants:CDX78578 | EnsemblPlantsGene:GSBRNA2T00129988001 | InterPro:Surf2 | ncoils:Coil | PANTHER:PTHR32175 | PANTHER:PTHR32175:SF2 |
| PFAM:PF05477 | ProteinID:CDX78578 | ProteinID:CDX78578.1 | SEG:seg | UniParc:UPI0004EED8E1 | MapMan:35.2 |
Description
BnaA03g04900D
Coordinates
chrLK031815:-:1372473..1373941
Molecular Weight (calculated)
30934.9 Da
IEP (calculated)
4.852
GRAVY (calculated)
-1.374
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAGEEMTT TVKEGANLLG KPKYKKIENG RFRCVQTGHE LLEKDKTVYS ESKRCRLGLI DHALSHSKPP LNLFEQDPSS RSKLKCKLTG DTVNKTEEHI
101: WKHINGRRFL NKLEEKERER ESGAIPEEGG ETVVKENGVK EEKKKNKKKK KKNKKKNKKE EIGEDVVMDE LEHENDEDVG GQEELDFWMP PDGERWDFDD
201: GGDRWGSDSE EEDEKNGEED PIVGEMDEDG NSSLDDCILG EVDEDETLES KKRKPEELSS KKKKKINTTA S
101: WKHINGRRFL NKLEEKERER ESGAIPEEGG ETVVKENGVK EEKKKNKKKK KKNKKKNKKE EIGEDVVMDE LEHENDEDVG GQEELDFWMP PDGERWDFDD
201: GGDRWGSDSE EEDEKNGEED PIVGEMDEDG NSSLDDCILG EVDEDETLES KKRKPEELSS KKKKKINTTA S
001: MAATEEEVTT TKEGADLLGK PKYKKLENGR FKCVQTGHEL LEKDKKVYSQ SKRCRLGLID YALSHSKPPL NLFEQDPNAR SKLKCKLTGD TVNKTEEHIW
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASNKRK HEELGSSDLP SKKKNKKKKK KKNVEATSSS Y
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASNKRK HEELGSSDLP SKKKNKKKKK KKNVEATSSS Y
Arabidopsis Description
At5g14440 [Source:UniProtKB/TrEMBL;Acc:Q6NPE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.