Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78578 | Canola | nucleus | 88.3 | 91.88 |
| CDX91061 | Canola | nucleus | 73.05 | 71.03 |
| CDY70251 | Canola | nucleus | 73.05 | 70.79 |
| AT5G14440.1 | Thale cress | nucleus | 71.63 | 69.18 |
| CDX77338 | Canola | nucleus | 21.28 | 63.83 |
| PGSC0003DMT400032840 | Potato | nucleus | 44.68 | 47.73 |
| Solyc02g093510.2.1 | Tomato | nucleus | 42.91 | 46.01 |
| KRH06355 | Soybean | nucleus | 45.74 | 45.42 |
| VIT_14s0066g00260.t01 | Wine grape | nucleus | 43.62 | 45.05 |
| KRH07108 | Soybean | nucleus | 45.04 | 44.72 |
| HORVU2Hr1G082940.1 | Barley | nucleus | 30.14 | 39.35 |
| Zm00001d025694_P001 | Maize | nucleus | 36.88 | 37.96 |
| TraesCS2D01G337500.1 | Wheat | nucleus | 36.52 | 36.92 |
| TraesCS2B01G356700.2 | Wheat | nucleus | 36.52 | 36.52 |
| TraesCS2A01G325200.1 | Wheat | nucleus | 36.52 | 36.4 |
| GSMUA_Achr11P... | Banana | nucleus | 37.94 | 35.91 |
| KXG26564 | Sorghum | nucleus | 36.17 | 35.54 |
| GSMUA_Achr2P21040_001 | Banana | nucleus | 36.52 | 35.03 |
| CDY64957 | Canola | cytosol | 24.11 | 23.94 |
| CDY01087 | Canola | cytosol | 23.05 | 20.97 |
| CDY00873 | Canola | cytosol | 24.11 | 20.86 |
| CDX99929 | Canola | nucleus | 28.37 | 18.74 |
| CDY24130 | Canola | cytosol | 22.7 | 18.44 |
Protein Annotations
| EnsemblPlants:CDX70566 | EnsemblPlantsGene:GSBRNA2T00140407001 | InterPro:Surf2 | ncoils:Coil | PANTHER:PTHR32175 | PANTHER:PTHR32175:SF2 |
| PFAM:PF05477 | ProteinID:CDX70566 | ProteinID:CDX70566.1 | SEG:seg | UniParc:UPI0004EE08EB | MapMan:35.2 |
Description
BnaC03g06500D
Coordinates
chrLK031791:-:1039401..1040788
Molecular Weight (calculated)
32192.3 Da
IEP (calculated)
4.922
GRAVY (calculated)
-1.457
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAGEEMTT TVKEGANLLG KPKYKKIENG RFRCVQTGHE LLEKDKKVYS ESKRCRLGLI DHALSHNKPP LNLFEQDPSS SSKLKCKLTG DTVNKTEEHI
101: WKHINGRRFL NKLEEKEREK ESGAIPEEGG ETVVKENGVK EEKKKNKKKK KKNKKNKKKN KKEENGEDVV MDELQHENDE DVGGQEELDF WMPPDGERWD
201: FDDGGDRWGS DSEEEEEKNG EEDPIVDEMD EDGNSSLDDC IIGEVDEDGE NSLDETLESK KRKPEELSSK KNKKKKINTT AS
101: WKHINGRRFL NKLEEKEREK ESGAIPEEGG ETVVKENGVK EEKKKNKKKK KKNKKNKKKN KKEENGEDVV MDELQHENDE DVGGQEELDF WMPPDGERWD
201: FDDGGDRWGS DSEEEEEKNG EEDPIVDEMD EDGNSSLDDC IIGEVDEDGE NSLDETLESK KRKPEELSSK KNKKKKINTT AS
001: MAATEEEVTT TKEGADLLGK PKYKKLENGR FKCVQTGHEL LEKDKKVYSQ SKRCRLGLID YALSHSKPPL NLFEQDPNAR SKLKCKLTGD TVNKTEEHIW
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASNKRK HEELGSSDLP SKKKNKKKKK KKNVEATSSS Y
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASNKRK HEELGSSDLP SKKKNKKKKK KKNVEATSSS Y
Arabidopsis Description
At5g14440 [Source:UniProtKB/TrEMBL;Acc:Q6NPE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.