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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400032840 Potato nucleus 89.35 89.02
KRH07108 Soybean nucleus 55.51 51.41
KRH06355 Soybean nucleus 55.51 51.41
VIT_14s0066g00260.t01 Wine grape nucleus 50.19 48.35
Bra006255.1-P Field mustard nucleus 45.25 43.27
CDX70566 Canola nucleus 46.01 42.91
AT5G14440.1 Thale cress nucleus 47.53 42.81
CDX78578 Canola nucleus 44.11 42.8
CDX91061 Canola nucleus 46.77 42.41
Bra023466.1-P Field mustard nucleus 46.39 41.64
CDY70251 Canola nucleus 46.01 41.58
HORVU2Hr1G082940.1 Barley nucleus 33.46 40.74
GSMUA_Achr2P21040_001 Banana nucleus 44.49 39.8
GSMUA_Achr11P... Banana nucleus 44.11 38.93
KXG26564 Sorghum nucleus 42.21 38.68
TraesCS2D01G337500.1 Wheat nucleus 40.68 38.35
TraesCS2A01G325200.1 Wheat nucleus 40.68 37.81
TraesCS2B01G356700.2 Wheat nucleus 40.3 37.59
Zm00001d025694_P001 Maize nucleus 38.4 36.86
CDX77338 Canola nucleus 12.55 35.11
Protein Annotations
EnsemblPlants:Solyc02g093510.2.1EnsemblPlantsGene:Solyc02g093510.2InterPro:Surf2ncoils:CoilPANTHER:PTHR32175PANTHER:PTHR32175:SF2
PFAM:PF05477SEG:segUniParc:UPI00027686E4UniProt:K4BDE7MapMan:35.2:
Description
No Description!
Coordinates
chr2:+:54354600..54357527
Molecular Weight (calculated)
29245.0 Da
IEP (calculated)
7.635
GRAVY (calculated)
-1.281
Length
263 amino acids
Sequence
(BLAST)
001: MGKKASGVGE GGDGSTGKEG YKLLGNPTFK KLENGRFKCV QTGHELPEHA RDSYAHSKHC RLGLIDAALS KNKPPLNMFN QDPLNRSKLI CKLTGDTVNK
101: SEEHIWKHMS GKRFLRMLEK KETETEMENG GLEKQVENEA AKKTDSKANR RDKKKNKKKE IEDASKVISE IRDSSGKNSG SEDDDEFWMP PVGARWDNDD
201: GGDRWGSGSE SEEEEEDAIG QDGGTEEENH DTGELSKRAK RMSLEIGPSS FASRKKKKKT SAT
Best Arabidopsis Sequence Match ( AT5G14440.1 )
(BLAST)
001: MAATEEEVTT TKEGADLLGK PKYKKLENGR FKCVQTGHEL LEKDKKVYSQ SKRCRLGLID YALSHSKPPL NLFEQDPNAR SKLKCKLTGD TVNKTEEHIW
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASSNKR KHEELGSSDL PSKKKNKKKK KKKNVEATSS SY
Arabidopsis Description
At5g14440 [Source:UniProtKB/TrEMBL;Acc:Q6NPE4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.