Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70251 | Canola | nucleus | 100.0 | 32.3 |
| Bra023466.1-P | Field mustard | nucleus | 100.0 | 32.08 |
| CDX91061 | Canola | nucleus | 75.53 | 24.48 |
| CDX70566 | Canola | nucleus | 63.83 | 21.28 |
| AT5G14440.1 | Thale cress | nucleus | 60.64 | 19.52 |
| CDX78578 | Canola | nucleus | 55.32 | 19.19 |
| PGSC0003DMT400032840 | Potato | nucleus | 37.23 | 13.26 |
| VIT_14s0066g00260.t01 | Wine grape | nucleus | 37.23 | 12.82 |
| Solyc02g093510.2.1 | Tomato | nucleus | 35.11 | 12.55 |
| HORVU2Hr1G082940.1 | Barley | nucleus | 27.66 | 12.04 |
| KRH06355 | Soybean | nucleus | 36.17 | 11.97 |
| KRH07108 | Soybean | nucleus | 34.04 | 11.27 |
| GSMUA_Achr11P... | Banana | nucleus | 31.91 | 10.07 |
| TraesCS2D01G337500.1 | Wheat | nucleus | 28.72 | 9.68 |
| TraesCS2B01G356700.2 | Wheat | nucleus | 28.72 | 9.57 |
| TraesCS2A01G325200.1 | Wheat | nucleus | 28.72 | 9.54 |
| Zm00001d025694_P001 | Maize | nucleus | 27.66 | 9.49 |
| KXG26564 | Sorghum | nucleus | 27.66 | 9.06 |
| GSMUA_Achr2P21040_001 | Banana | nucleus | 27.66 | 8.84 |
| CDY64957 | Canola | cytosol | 12.77 | 4.23 |
| CDY01087 | Canola | cytosol | 12.77 | 3.87 |
| CDY00873 | Canola | cytosol | 12.77 | 3.68 |
| CDY24130 | Canola | cytosol | 12.77 | 3.46 |
| CDX99929 | Canola | nucleus | 13.83 | 3.04 |
Protein Annotations
| EnsemblPlants:CDX77338 | EnsemblPlantsGene:GSBRNA2T00128118001 | PANTHER:PTHR32175 | PANTHER:PTHR32175:SF2 | ProteinID:CDX77338 | ProteinID:CDX77338.1 |
| SEG:seg | UniParc:UPI0004EED390 | MapMan:35.2 | : | : | : |
Description
BnaC08g03830D
Coordinates
chrLK031810:-:1686397..1687607
Molecular Weight (calculated)
10444.6 Da
IEP (calculated)
4.116
GRAVY (calculated)
-1.597
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MPPDGERWDF DDGGDRWGSD SEEEEEEPIG EIDEDGEASL DDCIIGEVDE DGKNSLDETP ESKKRKPEEL SSSSLPSSKK KKNKKNKKVK TTAS
001: MAATEEEVTT TKEGADLLGK PKYKKLENGR FKCVQTGHEL LEKDKKVYSQ SKRCRLGLID YALSHSKPPL NLFEQDPNAR SKLKCKLTGD TVNKTEEHIW
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASNKRK HEELGSSDLP SKKKNKKKKK KKNVEATSSS Y
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASNKRK HEELGSSDLP SKKKNKKKKK KKNVEATSSS Y
Arabidopsis Description
At5g14440 [Source:UniProtKB/TrEMBL;Acc:Q6NPE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.