CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24130	Canola	cytosol	61.83	76.08
CDY00873	Canola	cytosol	57.85	75.77
CDY64957	Canola	cytosol	47.78	71.83
CDY01087	Canola	cytosol	47.54	65.48
AT5G40570.2	Thale cress	nucleus	31.62	63.98
CDX78578	Canola	nucleus	18.03	28.41
CDX70566	Canola	nucleus	18.74	28.37
TraesCS2B01G356700.2	Wheat	nucleus	18.27	27.66
CDY70251	Canola	nucleus	18.74	27.49
TraesCS2D01G337500.1	Wheat	nucleus	17.8	27.24
TraesCS2A01G325200.1	Wheat	nucleus	18.03	27.21
CDX91061	Canola	nucleus	18.27	26.9
HORVU2Hr1G082940.1	Barley	nucleus	13.58	26.85
GSMUA_Achr11P...	Banana	nucleus	18.03	25.84
Zm00001d025694_P001	Maize	nucleus	16.39	25.55
GSMUA_Achr2P21040_001	Banana	nucleus	17.56	25.51
KXG26564	Sorghum	nucleus	16.86	25.09
CDX77338	Canola	nucleus	3.04	13.83

Protein Annotations

KEGG:00051+2.4.1.-	KEGG:00512+2.4.1.-	KEGG:00513+2.4.1.-	KEGG:00514+2.4.1.-	KEGG:00522+2.4.1.-	KEGG:00533+2.4.1.-
KEGG:00540+2.4.1.-	KEGG:00550+2.4.1.-	KEGG:00561+2.4.1.-	KEGG:00563+2.4.1.-	KEGG:00600+2.4.1.-	KEGG:00601+2.4.1.-
KEGG:00603+2.4.1.-	KEGG:00604+2.4.1.-	KEGG:00906+2.4.1.-	KEGG:00908+2.4.1.-	KEGG:00941+2.4.1.-	KEGG:00942+2.4.1.-
KEGG:00944+2.4.1.-	KEGG:00945+2.4.1.-	KEGG:00965+2.4.1.-	MapMan:35.1	GO:A0A078EGL8	EnsemblPlants:CDX99929
ProteinID:CDX99929	ProteinID:CDX99929.1	InterPro:GAUT	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0016757	GO:GO:0045489	GO:GO:0047262	GO:GO:0071555	EnsemblPlantsGene:GSBRNA2T00108764001	InterPro:Glyco_trans_8
PFAM:PF01501	PFAM:PF05477	PANTHER:PTHR32116	PANTHER:PTHR32116:SF27	InterPro:Surf2	UniPathway:UPA00845
UniParc:UPI0004EEB4D0	SEG:seg	:	:	:	:

Description

BnaC09g27760D

Coordinates

chrLK031915:-:767034..769203

Molecular Weight (calculated)

49059.3 Da

IEP (calculated)

9.934

GRAVY (calculated)

-0.745

Length

427 amino acids

Sequence
(BLAST)

001: MTELKKVFKK KRKHYRKSTQ RPWQTIGLWG RRGKGRQNRS NHAKADHSYE NSKTGTAEGF AKVSCFENLL GSPTFVDIRN RRLRCVETGH EVVAGDEEAY
101: TRNKRCRLGL IDHTLSHGKS PLTMFSQCLI SRSKLVCKII GDTVNKNEEH IWKYVNRKRF LPRLEQVERG AGTSGKTKKI QVTNNHRRVK EETGSNDSEL
201: WMHKSSSGLE SEQESDEENC KGSHCDAKEY EELSERTKRM SIEIGPRQMS SVIEKSAKYA QIAAEEVPNS FYCLGRKLAE RIYAVASKLT NNSLYHVCVF
301: SDNIVATSVV VNSTALNSKA PEKVVFHLVT NAMKSWFAMN MDNPRGVTVE VQKFEDFKWL NASYVPVLKQ LQDSDTQSYY FSGHNDDGRT QIKFRNPKYL
401: STPNHLNAQL YLFIRPYKLG YEDIKFL

Best Arabidopsis Sequence Match ( AT5G40570.1 )
(BLAST)

001: MMKEKAKEGK SLFGSPTFVD LGNGRLRCVE TGHEVLAGDV ESYARNKRCR LGLINHALSL GKPPLNMFSQ CPLSRSKLVC KLTGDTVNKN EEHIWKHVNG
101: KRFLHKLEQV ERGAGSSGRT EETQVNNPRH NKEDSGSEES DFWMPKSSSD SELDEETDEE NCKGSHCDDK ESEELSERTK RMSLEIGPSS FASRKKKSKN
201: DELS

Arabidopsis Description

Surfeit locus protein 2 (SURF2) [Source:UniProtKB/TrEMBL;Acc:A8MRG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.