Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006255.1-P | Field mustard | nucleus | 68.15 | 72.36 |
| CDX70566 | Canola | nucleus | 69.18 | 71.63 |
| CDX78578 | Canola | nucleus | 66.44 | 71.59 |
| Bra023466.1-P | Field mustard | nucleus | 65.75 | 65.53 |
| CDY70251 | Canola | nucleus | 65.07 | 65.29 |
| CDX91061 | Canola | nucleus | 64.73 | 65.17 |
| CDX77338 | Canola | nucleus | 19.52 | 60.64 |
| PGSC0003DMT400032840 | Potato | nucleus | 44.86 | 49.62 |
| Solyc02g093510.2.1 | Tomato | nucleus | 42.81 | 47.53 |
| VIT_14s0066g00260.t01 | Wine grape | nucleus | 43.84 | 46.89 |
| KRH06355 | Soybean | nucleus | 45.21 | 46.48 |
| KRH07108 | Soybean | nucleus | 44.86 | 46.13 |
| HORVU2Hr1G082940.1 | Barley | nucleus | 29.45 | 39.81 |
| GSMUA_Achr11P... | Banana | nucleus | 38.7 | 37.92 |
| TraesCS2D01G337500.1 | Wheat | nucleus | 35.96 | 37.63 |
| Zm00001d025694_P001 | Maize | nucleus | 35.27 | 37.59 |
| TraesCS2B01G356700.2 | Wheat | nucleus | 35.96 | 37.23 |
| TraesCS2A01G325200.1 | Wheat | nucleus | 35.96 | 37.1 |
| AT5G40570.2 | Thale cress | nucleus | 26.37 | 36.49 |
| GSMUA_Achr2P21040_001 | Banana | nucleus | 35.96 | 35.71 |
| KXG26564 | Sorghum | nucleus | 34.25 | 34.84 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831295 | UniProt:A0A178U9Q1 | ProteinID:AED92034.1 | ArrayExpress:AT5G14440 | EnsemblPlantsGene:AT5G14440 |
| RefSeq:AT5G14440 | TAIR:AT5G14440 | RefSeq:AT5G14440-TAIR-G | EnsemblPlants:AT5G14440.1 | TAIR:AT5G14440.1 | Unigene:At.69921 |
| EMBL:BT010715 | EMBL:BT010980 | ncoils:Coil | GO:GO:0008150 | RefSeq:NP_196948.2 | ProteinID:OAO89954.1 |
| PFAM:PF05477 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR32175 | PANTHER:PTHR32175:SF2 | UniProt:Q6NPE4 | InterPro:Surf2 | UniParc:UPI0000220057 | SEG:seg |
Description
At5g14440 [Source:UniProtKB/TrEMBL;Acc:Q6NPE4]
Coordinates
chr5:-:4655903..4657907
Molecular Weight (calculated)
33398.7 Da
IEP (calculated)
5.324
GRAVY (calculated)
-1.408
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATEEEVTT TKEGADLLGK PKYKKLENGR FKCVQTGHEL LEKDKKVYSQ SKRCRLGLID YALSHSKPPL NLFEQDPNAR SKLKCKLTGD TVNKTEEHIW
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASSNKR KHEELGSSDL PSKKKNKKKK KKKNVEATSS SY
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASSNKR KHEELGSSDL PSKKKNKKKK KKKNVEATSS SY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.