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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
EER87920
EER90528
EER90755
EER97813
EES04471
EES05192
EES05529
EES06400
EES10769
EES11682
EES19598
KXG25976
KXG26564
KXG34465
KXG34492
KXG37970
OQU77586
OQU79534
OQU87905

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39760.1 EES05529 AT1G26830.1 15618422
AT2G39760.1 EES05529 AT1G26830.1 15659098
AT2G39760.1 EES05529 AT1G26830.1 15772280
AT2G39760.1 EER87920 AT1G52540.1 21798944
AT2G39760.1 EES06400 AT1G52540.1 21798944
AT2G39760.1 EES05529 AT1G69670.1 15618422
AT2G39760.1 EES05529 AT1G69670.1 15659098
AT2G39760.1 EER97813 AT2G39760.1 15618422
AT2G39760.1 EER97813 AT2G39760.1 21798944
AT2G39760.1 EER90528 AT3G23700.1 21798944
AT2G39760.1 EER90755 AT3G43700.1 15618422
AT2G39760.1 KXG25976 AT3G43700.1 15618422
AT2G39760.1 KXG34465 AT3G43700.1 15618422
AT2G39760.1 EES04471 AT3G54170.1 21798944
AT2G39760.1 KXG37970 AT4G14740.1 21798944
AT2G39760.1 OQU79534 AT4G14740.1 21798944
AT2G39760.1 KXG34492 AT4G14900.1 21798944
AT2G39760.1 OQU77586 AT4G22720.1 21798944
AT2G39760.1 EES05192 AT5G06270.1 21798944
AT2G39760.1 EES10769 AT5G06270.1 21798944
AT2G39760.1 EES11682 AT5G06270.1 21798944
AT2G39760.1 EES19598 AT5G06270.1 21798944
AT2G39760.1 OQU87905 AT5G06270.1 21798944
AT2G39760.1 KXG26564 AT5G14440.1 21798944
AT2G39760.1 EER90755 AT5G21010.1 15618422
AT2G39760.1 KXG25976 AT5G21010.1 15618422
AT2G39760.1 KXG34465 AT5G21010.1 15618422
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G266900.1 Wheat cytosol 80.35 81.57
TraesCS2A01G255800.1 Wheat cytosol 80.35 81.57
Os07t0101400-01 Rice cytosol 79.85 81.27
Zm00001d007888_P002 Maize plastid 79.6 74.42
KXG25976 Sorghum cytosol 22.39 74.38
HORVU2Hr1G064920.1 Barley plastid 79.35 74.19
GSMUA_Achr7P10650_001 Banana cytosol 63.68 63.21
VIT_13s0019g02260.t01 Wine grape cytosol 62.94 62.32
PGSC0003DMT400069942 Potato cytosol 61.69 60.78
Solyc05g052960.2.1 Tomato cytosol 61.19 60.29
KRH31032 Soybean nucleus 61.69 59.76
KRG97837 Soybean cytosol 60.95 59.18
Bra000147.1-P Field mustard cytosol 55.47 58.38
CDX93238 Canola cytosol 56.72 57.58
Bra017053.1-P Field mustard cytosol 56.97 57.39
CDY07031 Canola cytosol 56.72 57.14
GSMUA_Achr10P... Banana cytosol 26.87 57.14
CDY07638 Canola cytosol 56.72 57.0
AT2G39760.1 Thale cress cytosol 57.46 56.62
CDY61778 Canola cytosol 56.72 54.03
EER99824 Sorghum plastid 55.22 52.11
EER90755 Sorghum cytosol 53.73 50.35
KXG34465 Sorghum cytosol 53.48 48.75
KXG24752 Sorghum cytosol 16.67 40.61
OQU80115 Sorghum cytosol 33.08 38.0
OQU82372 Sorghum plastid 31.84 37.54
EES14728 Sorghum cytosol 32.84 37.29
EES13596 Sorghum mitochondrion 32.09 37.18
EES14743 Sorghum cytosol, mitochondrion, plastid 33.08 36.94
KXG24755 Sorghum mitochondrion 34.33 36.7
OQU80150 Sorghum plastid 31.84 36.68
OQU82373 Sorghum cytosol, plastid 30.85 36.58
KXG24742 Sorghum mitochondrion 32.34 36.01
CDX93236 Canola cytosol 36.32 35.78
EES14736 Sorghum cytosol 31.34 35.49
KXG27151 Sorghum plastid 34.08 35.49
OQU80118 Sorghum cytosol 10.7 35.25
EES11459 Sorghum plastid 33.08 34.91
OQU80119 Sorghum cytosol 32.84 34.83
EER99574 Sorghum cytosol 31.34 34.52
EER87831 Sorghum cytosol 30.35 34.46
EES14737 Sorghum cytosol 30.35 34.37
EES08963 Sorghum cytosol 32.34 34.21
KXG24747 Sorghum cytosol 30.35 34.08
KXG24756 Sorghum cytosol 29.85 33.8
EES11455 Sorghum cytosol 26.62 33.02
EES13585 Sorghum cytosol, plastid 29.35 30.57
KXG24406 Sorghum cytosol 29.6 28.33
KXG24338 Sorghum cytosol 27.11 23.0
Protein Annotations
Gene3D:1.25.40.420Gene3D:2.60.210.10Gene3D:3.30.710.10MapMan:35.1EntrezGene:8081575InterPro:BPM_C
InterPro:BTB/POZ_domUniProt:C5X6J5EnsemblPlants:EER97813ProteinID:EER97813ProteinID:EER97813.1GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005829GO:GO:0006464GO:GO:0006950GO:GO:0006970GO:GO:0008150
GO:GO:0008152GO:GO:0009628GO:GO:0009987GO:GO:0019538GO:GO:0031396GO:GO:0042802
GO:GO:0071472InterPro:IPR000210InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domPFAM:PF00651
PFscan:PS50097PFscan:PS50144PANTHER:PTHR24411PANTHER:PTHR24411:SF54InterPro:SKP1/BTB/POZ_sfSMART:SM00061
SMART:SM00225EnsemblPlantsGene:SORBI_3002G001600SUPFAM:SSF49599SUPFAM:SSF54695unigene:Sbi.11385InterPro:TRAF-like
UniParc:UPI0001A83757RefSeq:XP_002461292.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:-:201574..208067
Molecular Weight (calculated)
44747.6 Da
IEP (calculated)
7.327
GRAVY (calculated)
-0.197
Length
402 amino acids
Sequence
(BLAST)
001: MAIPPRTPPP PPSWSRYVTE TVKGSHQFTV RGFSLAKGMG PGRHLASDIF AVGGYHWAVY FYPDGKNAED NSNYVSVFVA LASDGIDVRA LFDLTLLDQS
101: GRGRHKIHSH FGRKLDSGPY TLKYRGSMWG YKRFYKRSLL EASDFLKNDC LVMNCTVGVV KNRMETPKDI QIHVPRSDMG HCFKELLSRG IGCDITFEVR
201: DEKVRAHKWI LAARSPVFKA QFFGPIGKPD LHTVVVEDVE PVVFKAMVNF MYTDELPSIS ELAGSASTWT STVVVQHLLA AADRYGLDRL RILCESKLCD
301: ELTPETVATT LALAEQHHCA ELKSACLRFA AVRENLGAVM GTEGFDYLEE TCPSLLSDLL ATVAEVDDDP ASLDRKRGVC GNQVLAPVES VEATERRTRR
401: RL
Best Arabidopsis Sequence Match ( AT2G39760.1 )
(BLAST)
001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
Arabidopsis Description
BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.