CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88729
EER90124
EER93165
EER98905
EES04642
EES14911
KXG28294
KXG33215
KXG35268
KXG35639
OQU89150

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22720.1	EER88729	AT2G25000.1	21798944
AT4G22720.1	EER90124	AT2G25000.1	21798944
AT4G22720.1	EER98905	AT2G25000.1	21798944
AT4G22720.1	EES04642	AT2G25000.1	21798944
AT4G22720.1	KXG35639	AT2G25000.1	21798944
AT4G22720.1	KXG33215	AT4G00980.1	21798944
AT4G22720.1	EES14911	AT5G06780.1	21798944
AT4G22720.1	KXG35268	AT5G06780.1	21798944
AT4G22720.1	OQU89150	AT5G06780.1	21798944
AT4G22720.1	KXG28294	AT5G19150.1	21798944
AT4G22720.1	EER93165	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037675_P001	Maize	extracellular	96.59	96.59
TraesCS1B01G143400.1	Wheat	plastid	91.08	91.08
TraesCS1A01G123600.1	Wheat	plastid	91.08	91.08
TraesCS1D01G130800.1	Wheat	plastid	90.55	90.55
GSMUA_Achr7P10790_001	Banana	cytosol	77.43	85.01
KRG97103	Soybean	cytosol	76.64	82.95
KRH03601	Soybean	cytosol	76.12	82.39
PGSC0003DMT400027091	Potato	cytosol	73.75	81.21
Solyc02g068750.1.1	Tomato	cytosol	73.75	81.21
VIT_05s0102g00570.t01	Wine grape	cytosol	39.9	80.85
AT4G22720.1	Thale cress	cytosol	74.02	79.89
HORVU1Hr1G028330.1	Barley	cytosol, extracellular, mitochondrion, plastid	90.29	79.81
CDX82960	Canola	cytosol, mitochondrion	72.7	78.47
CDY67122	Canola	endoplasmic reticulum, extracellular	24.41	66.91
CDX79172	Canola	cytosol	73.23	65.96
Bra013635.1-P	Field mustard	cytosol	73.23	65.8
GSMUA_Achr10P...	Banana	cytosol	68.5	58.65
Bra020834.1-P	Field mustard	nucleus	12.07	46.94
OQU86762	Sorghum	plastid	23.1	18.76

Protein Annotations

MapMan:16.6.2.2.1	Gene3D:3.30.420.40	EntrezGene:8065902	UniProt:A0A1Z5R2K0	GO:GO:0000408	GO:GO:0002949
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0046872	GO:GO:0061711
InterPro:Gcp-like_dom	InterPro:KAE1/TsaD	InterPro:Kae1/OSGEP	HAMAP:MF_01446	EnsemblPlants:OQU77586	ProteinID:OQU77586
ProteinID:OQU77586.1	PFAM:PF00814	PRINTS:PR00789	ScanProsite:PS01016	PANTHER:PTHR11735	PANTHER:PTHR11735:SF14
InterPro:Peptidase_M22_CS	EnsemblPlantsGene:SORBI_3009G071700	SUPFAM:SSF53067	TIGRFAMs:TIGR00329	UniParc:UPI0001A88730	RefSeq:XP_002440752.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:8588538..8594670

Molecular Weight (calculated)

40972.4 Da

IEP (calculated)

5.774

GRAVY (calculated)

0.033

Length

381 amino acids

Sequence
(BLAST)

001: MSSSPSPANR RPAGPLALGL ESSANKIGIG VVSLSGDILS NPRHTYVTPP GHGFLPRETA QHHLAHLLPL LRAALAEAGV APADLACVCY TKGPGMGGPL
101: QVAAAAARAL SLLWRKPLVA VNHCVAHIEM GRAVTGAVDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLELSNDPSP GYNIEQLAKK
201: GEKFIDLPYA VKGMDVSFSG ILSFIEATAI EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDSKD VLIVGGVGCN ERLQEMMRIM CSERGGRLFA
301: TDDRYCIDNG AMIAYTGLLA YAHGATTPLE ESTFTQRFRT DEVHAIWREK EMPVLNNIHS DAMAEVSKDE ASMPTPIVVD S

Best Arabidopsis Sequence Match ( AT4G22720.2 )
(BLAST)

001: MKKKMIAIGF EGSANKIGVG IVTLDGTILA NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQV TPEEIDCICY TKGPGMGAPL QVSAIVVRVL
101: SQLWKKPIVA VNHCVAHIEM GRVVTGADDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLKLSNDPSP GYNIEQLAKK GENFIDLPYA
201: VKGMDVSFSG ILSYIETTAE EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQEMMRTM CSERDGKLFA TDDRYCIDNG
301: AMIAYTGLLA FVNGIETPIE DSTFTQRFRT DEVHAVWREK EAVLLGDKKV AAN

Arabidopsis Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:O49653]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.