CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97195
KRH02108
KRH05350
KRH15674
KRH33344
KRH38126
KRH51040
KRH52329
KRH61669
KRH68921
KRH70391
KRH71929

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22720.1	KRH05350	AT2G25000.1	21798944
AT4G22720.1	KRH15674	AT2G25000.1	21798944
AT4G22720.1	KRH52329	AT2G25000.1	21798944
AT4G22720.1	KRH61669	AT2G25000.1	21798944
AT4G22720.1	KRG97195	AT4G00980.1	21798944
AT4G22720.1	KRH68921	AT4G00980.1	21798944
AT4G22720.1	KRH38126	AT5G06780.1	21798944
AT4G22720.1	KRH71929	AT5G06780.1	21798944
AT4G22720.1	KRH02108	AT5G19150.1	21798944
AT4G22720.1	KRH51040	AT5G19150.1	21798944
AT4G22720.1	KRH33344	AT5G51110.1	21798944
AT4G22720.1	KRH70391	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03601	Soybean	cytosol	94.32	94.32
GSMUA_Achr7P10790_001	Banana	cytosol	87.78	89.05
Solyc02g068750.1.1	Tomato	cytosol	86.36	87.86
PGSC0003DMT400027091	Potato	cytosol	86.36	87.86
AT4G22720.1	Thale cress	cytosol	86.93	86.69
CDX82960	Canola	cytosol, mitochondrion	86.08	85.84
VIT_00s2082g00010.t01	Wine grape	cytosol	35.8	83.44
OQU77586	Sorghum	plastid	82.95	76.64
TraesCS1A01G123600.1	Wheat	plastid	82.39	76.12
TraesCS1B01G143400.1	Wheat	plastid	82.1	75.85
Zm00001d037675_P001	Maize	extracellular	81.82	75.59
TraesCS1D01G130800.1	Wheat	plastid	81.82	75.59
CDX79172	Canola	cytosol	86.08	71.63
Bra013635.1-P	Field mustard	cytosol	85.8	71.23
HORVU1Hr1G028330.1	Barley	cytosol, extracellular, mitochondrion, plastid	82.1	67.05
CDY67122	Canola	endoplasmic reticulum, extracellular	26.42	66.91
GSMUA_Achr10P...	Banana	cytosol	76.42	60.45
Bra020834.1-P	Field mustard	nucleus	15.06	54.08
KRH65326	Soybean	plastid	24.15	19.1
KRH76215	Soybean	cytosol	12.5	13.58
KRH65783	Soybean	nucleus	5.11	9.47

Protein Annotations

EntrezGene:100780256	MapMan:16.6.2.2.1	Gene3D:3.30.420.40	EMBL:ACUP02012176	EnsemblPlantsGene:GLYMA_19G252200	GO:GO:0000408
GO:GO:0002949	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0046872
GO:GO:0061711	InterPro:Gcp-like_dom	UniProt:I1NCH1	InterPro:KAE1/TsaD	EnsemblPlants:KRG97103	ProteinID:KRG97103
ProteinID:KRG97103.1	ProteinID:KRG97104.1	InterPro:Kae1/OSGEP	HAMAP:MF_01446	PFAM:PF00814	PRINTS:PR00789
PANTHER:PTHR11735	PANTHER:PTHR11735:SF14	MetaCyc:PWY-5353	MetaCyc:PWY-5368	MetaCyc:PWY-5995	MetaCyc:PWY-6433
MetaCyc:PWY-6803	MetaCyc:PWY-6958	MetaCyc:PWY-7053	MetaCyc:PWY-7409	MetaCyc:PWY-7416	MetaCyc:PWY-7470
MetaCyc:PWY-7618	SUPFAM:SSF53067	TIGRFAMs:TIGR00329	UniParc:UPI000233ED40	:	:

Description

hypothetical protein

Coordinates

chr19:+:49769145..49771163

Molecular Weight (calculated)

38503.6 Da

IEP (calculated)

6.238

GRAVY (calculated)

0.003

Length

352 amino acids

Sequence
(BLAST)

001: MKRMIALGFE GSANKIGVGV VTLDGTILSN PRHTYITPPG QGFLPRETAQ HHLQHVLPLI KSALETAQIT PHDIDCLCYT KGPGMGAPLQ VSAIVVRVLS
101: LLWKKPIVAV NHCVAHIEMG RIVTGADDPV VLYVSGGNTQ VIAYSEGRYR IFGETIDIAV GNCLDRFARV LTLSNDPSPG YNIEQLAKKG EKFIDLPYVV
201: KGMDVSFSGI LSYIEATAAE KLKNNECTPA DLCYSLQETL FAMLVEITER AMAHCDTKDV LIVGGVGCNE RLQEMMRTMC SERGGRLFAT DDRYCIDNGA
301: MIAYTGLLEF AHGASTPLED STFTQRFRTD EVKAIWREAN LAKLNGLAEK ST

Best Arabidopsis Sequence Match ( AT4G22720.2 )
(BLAST)

001: MKKKMIAIGF EGSANKIGVG IVTLDGTILA NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQV TPEEIDCICY TKGPGMGAPL QVSAIVVRVL
101: SQLWKKPIVA VNHCVAHIEM GRVVTGADDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLKLSNDPSP GYNIEQLAKK GENFIDLPYA
201: VKGMDVSFSG ILSYIETTAE EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQEMMRTM CSERDGKLFA TDDRYCIDNG
301: AMIAYTGLLA FVNGIETPIE DSTFTQRFRT DEVHAVWREK EAVLLGDKKV AAN

Arabidopsis Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:O49653]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.