Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97195 | Soybean | endoplasmic reticulum, golgi, vacuole | 73.48 | 74.82 |
| KRH60062 | Soybean | nucleus | 14.34 | 48.19 |
| Os01t0706000-01 | Rice | nucleus | 14.52 | 44.02 |
| TraesCS3A01G256000.1 | Wheat | nucleus | 14.34 | 42.11 |
| GSMUA_Achr8P05370_001 | Banana | nucleus | 12.72 | 41.76 |
| TraesCS3B01G288800.1 | Wheat | nucleus | 13.98 | 41.05 |
| KXG33215 | Sorghum | nucleus | 13.44 | 40.98 |
| TraesCS3D01G253600.1 | Wheat | nucleus | 13.98 | 40.84 |
| TraesCS3B01G284700.1 | Wheat | nucleus | 13.98 | 40.84 |
| KRH41342 | Soybean | nucleus | 14.34 | 40.2 |
| CDY07161 | Canola | nucleus | 30.65 | 36.93 |
| Bra037396.1-P | Field mustard | nucleus | 30.65 | 36.85 |
| CDY48492 | Canola | nucleus | 30.47 | 36.48 |
| Zm00001d011680_P002 | Maize | cytosol | 13.62 | 36.36 |
| AT4G00980.1 | Thale cress | nucleus | 31.0 | 35.45 |
| KRH53937 | Soybean | nucleus | 5.73 | 30.48 |
| HORVU3Hr1G066410.6 | Barley | cytosol | 9.14 | 26.98 |
| KRH64003 | Soybean | nucleus | 5.2 | 25.22 |
| Zm00001d043705_P005 | Maize | nucleus | 12.72 | 17.71 |
Protein Annotations
| EntrezGene:100818901 | Gene3D:2.30.31.10 | MapMan:35.1 | EMBL:ACUP02002127 | InterPro:DEK_C | EnsemblPlantsGene:GLYMA_03G258000 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003713 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0060261 | UniProt:I1JS05 | InterPro:IPR001878 | InterPro:IPR009044 | EnsemblPlants:KRH68921 | ProteinID:KRH68921 |
| ProteinID:KRH68921.1 | InterPro:PC4 | PFAM:PF02229 | PFAM:PF08766 | PFAM:PF14223 | PFscan:PS50158 |
| PANTHER:PTHR13215 | PANTHER:PTHR13215:SF6 | SUPFAM:SSF54447 | UniParc:UPI00023379BB | InterPro:Znf_CCHC | SEG:seg |
| InterPro:ssDNA-bd_transcriptional_reg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:45241049..45246160
Molecular Weight (calculated)
63202.0 Da
IEP (calculated)
6.533
GRAVY (calculated)
-0.638
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAETRRKVE EMVLDILKKS NIKEATEFTI RVAASERLGI DLSDTASKHF VRSVVESFLL SVAANEKSKD AEKKKENEDI AAKNDDVAKK EDVVVANEEE
101: SRETEVLPKL KRDDPERVIC HLSNRRNVAV KDFKGTTLVS IREFYMKDGK PLPGSKGISL SSEQWSTFKK SVPAIEEAIK KMEERIGSEP NGKQNGDVSN
201: SVVDVAYLEP NSKQKGDASN SVVDVATLEP HGKQNGDASN SVVDVAPLEP HGKQNGDASN SVVDVAPLEP VVPIEVIRFD GKNFQFWAPQ MELLLKQLKI
301: DYVLDEPCPN PTLGKSAKAE DIAATKAAER RWLNDDLTCQ RNILSHLSDP LYNLYANRKM SAKDLWEELK LVYLYEEFGT KRSQVKKYLE FQMVEEKAVI
401: EQIRELNGIA DSIAAAGIFI DDNFHVSAII SKLPPSWKDF CIKLMREEYL PYRKLMERIQ IEEEYRYGVK RVVEYSYSMG GYHQAYKGGH RRADYKPALG
501: MCRNRPEIIA RSVPCTVCGK RGHLSKHCWR RNDRQTNERK SEEDVRIPTE VDTQGATQ
101: SRETEVLPKL KRDDPERVIC HLSNRRNVAV KDFKGTTLVS IREFYMKDGK PLPGSKGISL SSEQWSTFKK SVPAIEEAIK KMEERIGSEP NGKQNGDVSN
201: SVVDVAYLEP NSKQKGDASN SVVDVATLEP HGKQNGDASN SVVDVAPLEP HGKQNGDASN SVVDVAPLEP VVPIEVIRFD GKNFQFWAPQ MELLLKQLKI
301: DYVLDEPCPN PTLGKSAKAE DIAATKAAER RWLNDDLTCQ RNILSHLSDP LYNLYANRKM SAKDLWEELK LVYLYEEFGT KRSQVKKYLE FQMVEEKAVI
401: EQIRELNGIA DSIAAAGIFI DDNFHVSAII SKLPPSWKDF CIKLMREEYL PYRKLMERIQ IEEEYRYGVK RVVEYSYSMG GYHQAYKGGH RRADYKPALG
501: MCRNRPEIIA RSVPCTVCGK RGHLSKHCWR RNDRQTNERK SEEDVRIPTE VDTQGATQ
001: MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
Arabidopsis Description
At4g00980 [Source:UniProtKB/TrEMBL;Acc:Q8GXX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.