Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58636 | Soybean | nucleus | 93.62 | 92.54 |
| AT1G14920.1 | Thale cress | nucleus | 70.21 | 68.11 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 70.6 | 65.65 |
| CDY04092 | Canola | cytosol | 65.18 | 63.11 |
| Bra024875.1-P | Field mustard | nucleus | 69.83 | 63.0 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 69.63 | 62.94 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 71.18 | 62.69 |
| CDY64837 | Canola | cytosol | 65.57 | 62.55 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 71.18 | 62.37 |
| Bra017443.1-P | Field mustard | cytosol | 64.99 | 61.43 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 38.49 | 61.04 |
| KRG97933 | Soybean | nucleus | 65.96 | 58.39 |
| GSMUA_Achr10P... | Banana | cytosol | 53.97 | 58.37 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 53.58 | 57.83 |
| KRH30942 | Soybean | cytosol | 65.57 | 56.97 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 63.06 | 52.75 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 63.06 | 52.58 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 63.06 | 52.5 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 63.25 | 52.49 |
| Os03t0707600-01 | Rice | nucleus | 63.25 | 52.32 |
| Zm00001d033680_P001 | Maize | nucleus | 63.44 | 52.06 |
| EER93592 | Sorghum | cytosol | 63.06 | 51.99 |
| Zm00001d013465_P001 | Maize | cytosol | 62.48 | 51.68 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 50.1 | 50.19 |
| KRG92263 | Soybean | cytosol | 38.49 | 49.87 |
| KRH54840 | Soybean | cytosol | 47.0 | 48.12 |
| KRH63032 | Soybean | cytosol | 46.81 | 48.11 |
| KRH34544 | Soybean | cytosol | 44.87 | 47.54 |
| KRH29015 | Soybean | cytosol | 18.38 | 33.33 |
| KRH34954 | Soybean | cytosol | 23.98 | 30.62 |
| KRH29089 | Soybean | mitochondrion | 25.53 | 29.86 |
| KRH29080 | Soybean | cytosol | 25.73 | 29.23 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 25.53 | 29.01 |
| KRG91825 | Soybean | nucleus | 24.95 | 27.74 |
| KRH24117 | Soybean | plastid | 23.79 | 27.64 |
| KRH70202 | Soybean | cytosol | 25.34 | 27.52 |
| KRH57194 | Soybean | cytosol | 27.08 | 27.4 |
| KRH27822 | Soybean | nucleus, plastid | 24.76 | 27.06 |
| KRH44884 | Soybean | cytosol | 22.63 | 27.02 |
| KRH08555 | Soybean | cytosol | 24.56 | 26.96 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 24.18 | 26.88 |
| KRH62871 | Soybean | cytosol | 23.02 | 26.86 |
| KRH03910 | Soybean | cytosol | 26.5 | 26.65 |
| KRH29971 | Soybean | cytosol | 22.44 | 26.24 |
| KRH13057 | Soybean | cytosol | 28.05 | 26.13 |
| KRH19587 | Soybean | cytosol | 25.92 | 25.48 |
| KRG94590 | Soybean | plastid | 33.46 | 25.4 |
| KRH06900 | Soybean | plastid | 33.46 | 25.22 |
| KRH24039 | Soybean | cytosol | 23.4 | 25.16 |
| KRH32212 | Soybean | cytosol | 25.53 | 24.58 |
| KRH03976 | Soybean | mitochondrion, nucleus | 30.95 | 23.92 |
| KRH57249 | Soybean | plastid | 30.37 | 23.64 |
| KRH40615 | Soybean | nucleus, plastid | 28.24 | 17.74 |
| KRH00551 | Soybean | nucleus, plastid | 28.24 | 17.34 |
Protein Annotations
| Gene3D:1.10.10.1290 | EntrezGene:100797336 | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | EMBL:ACUP02004811 |
| ncoils:Coil | InterPro:DELLA_N_sf | EnsemblPlantsGene:GLYMA_08G095800 | GO:GO:0000003 | GO:GO:0000989 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009737 | GO:GO:0009791 |
| GO:GO:0009863 | GO:GO:0009867 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010187 | GO:GO:0042538 |
| GO:GO:0043565 | GO:GO:2000033 | GO:GO:2000377 | UniProt:I1KRT7 | InterPro:IPR005202 | InterPro:IPR038088 |
| EnsemblPlants:KRH42544 | ProteinID:KRH42544 | ProteinID:KRH42544.1 | PFAM:PF03514 | PFAM:PF12041 | PFscan:PS50985 |
| PFscan:PS51257 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | SMART:SM01129 | InterPro:TF_DELLA | InterPro:TF_DELLA_N |
| InterPro:TF_GRAS | UniParc:UPI000211BAFB | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:7304006..7307882
Molecular Weight (calculated)
57263.9 Da
IEP (calculated)
5.012
GRAVY (calculated)
-0.204
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREREQLGS IAGTSSCGYS SGKSNLWEEE GGMDELLAVV GYKVRSSDMA EVAQKLERLE EAMGNVQDDL PEISNDVVHY NPSDISNWLE TMLSNFDPLP
101: SEEPEKDSAS SDYDLKAIPG KAIYGASDAL PNPKRVKADE SRRAVVVVDS QENGIRLVHS LMACAEAVEN NNLAVAEALV KQIGFLAVSQ VGAMRKVAIY
201: FAEALARRIY RVFPLQHSLS DSLQIHFYET CPYLKFAHFT ANQVILEAFQ GKNRVHVIDF GINQGMQWPA LMQALAVRTG GPPVFRLTGI GPPAADNSDH
301: LQEVGWKLAQ LAEEINVQFE YRGFVANSLA DLDASMLDLR EGEAVAVNSV FEFHKLLARP GAVEKVLSVV RQIRPEIVTV VEQEANHNRL SFVDRFTESL
401: HYYSTLFDSL EGSPVNPNDK AMSEVYLGKQ ICNVVACEGM DRVERHETLN QWRNRFVSTG FSSVHLGSNA YKQASMLLAL FAGGDGYRVE ENNGCLMLGW
501: HTRPLIATSA WQLAATR
101: SEEPEKDSAS SDYDLKAIPG KAIYGASDAL PNPKRVKADE SRRAVVVVDS QENGIRLVHS LMACAEAVEN NNLAVAEALV KQIGFLAVSQ VGAMRKVAIY
201: FAEALARRIY RVFPLQHSLS DSLQIHFYET CPYLKFAHFT ANQVILEAFQ GKNRVHVIDF GINQGMQWPA LMQALAVRTG GPPVFRLTGI GPPAADNSDH
301: LQEVGWKLAQ LAEEINVQFE YRGFVANSLA DLDASMLDLR EGEAVAVNSV FEFHKLLARP GAVEKVLSVV RQIRPEIVTV VEQEANHNRL SFVDRFTESL
401: HYYSTLFDSL EGSPVNPNDK AMSEVYLGKQ ICNVVACEGM DRVERHETLN QWRNRFVSTG FSSVHLGSNA YKQASMLLAL FAGGDGYRVE ENNGCLMLGW
501: HTRPLIATSA WQLAATR
001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
Arabidopsis Description
GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.