CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98291
KRH08190
KRH28715
KRH30312
KRH69884
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	KRH08190	AT3G50910.1	21798944
AT2G36990.1	KRH28715	AT3G50910.1	21798944
AT2G36990.1	KRH69884	AT3G50910.1	21798944
AT2G36990.1	KRH76747	AT3G50910.1	21798944
AT2G36990.1	KRG98291	AT5G58720.1	21798944
AT2G36990.1	KRH30312	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67719	Soybean	nucleus	93.86	93.86
KRH32532	Soybean	nucleus, plastid	66.06	63.65
KRH19920	Soybean	plastid	65.16	62.89
CDY66142	Canola	nucleus	37.36	61.24
GSMUA_Achr4P30300_001	Banana	nucleus	21.48	59.2
VIT_08s0040g01560.t01	Wine grape	plastid	59.21	58.47
CDX79708	Canola	endoplasmic reticulum, extracellular	14.26	53.02
Bra017213.1-P	Field mustard	plastid	50.72	52.72
AT2G36990.1	Thale cress	plastid	50.9	51.55
CDY18468	Canola	plastid	50.54	51.47
Solyc09g008040.2.1	Tomato	nucleus, plastid	50.18	49.38
PGSC0003DMT400055506	Potato	nucleus, plastid	50.18	47.77
GSMUA_Achr11P...	Banana	nucleus	44.95	43.01
HORVU5Hr1G125110.10	Barley	plastid	37.73	37.79
TraesCS5D01G551200.1	Wheat	plastid	37.91	37.57
TraesCS5B01G563800.2	Wheat	plastid	37.91	37.3
TraesCS4A01G315700.3	Wheat	plastid	37.91	37.1
Os08t0242800-01	Rice	plastid	37.91	36.71
KXG37075	Sorghum	plastid	36.46	36.4
Zm00001d012810_P003	Maize	plastid	25.45	32.94
KRH51354	Soybean	nucleus	27.44	30.4
KRH60664	Soybean	nucleus	28.34	27.84
KRH39837	Soybean	plastid	22.38	24.65
KRH23963	Soybean	plastid	22.38	24.65
KRH53442	Soybean	plastid	19.86	21.7
KRH04862	Soybean	mitochondrion	21.48	21.6
KRH64502	Soybean	plastid	20.22	21.58
KRH18145	Soybean	mitochondrion, nucleus	18.41	19.92
KRH16520	Soybean	mitochondrion, nucleus	18.05	19.53
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	12.27	16.46

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100793539	MapMan:15.6.2.1	EMBL:ACUP02012142	EnsemblPlantsGene:GLYMA_19G183100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	UniProt:I1NAA3	InterPro:IPR036388	ProteinID:KRG96005.1
ProteinID:KRG96006.1	EnsemblPlants:KRG96007	ProteinID:KRG96007	ProteinID:KRG96007.1	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI00023DE157	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:44174948..44181210

Molecular Weight (calculated)

62814.1 Da

IEP (calculated)

8.858

GRAVY (calculated)

-0.503

Length

554 amino acids

Sequence
(BLAST)

001: MFSSSPPFPS SSSPSVTMLH EQAAPAVASW SSSSAAQHFP TSVLLQEQRD EYKPFLHVHN KETTLNTRQM DMTSVHEKGN TSNADQLVHD FVQQLHLRSH
101: LQNLLTCSPT RGIAASSILQ PVDIDSEWPA DGVPRNAVSL AQQALSASKQ AVSTTGEMKL IEIDDDDPLP SGLASTSLTD SSLKKNKVVR STRIIERLSK
201: QRKSSKSKFL DEESYLERKS DVQRRLRLEK KLKEGYDPND PLRLFLSGPE SRQLLTREEE SQLITQLQDL SRLEEVKIRL QTQLRREPTL AEWADAVGHS
301: CYALQTQLHC ANRSKEKLFH ANLRMVVHIA KHYQGRGLSL QDLFQEGSTG LMKSIEKFKP EAGCRFGTYA YWWIRHAVRK AIFLHSRTIR LPENLYTLLG
401: KVIEAKKSYI QEGNLHPTKE ELARKVGITI EKMDNLLFAS RNPISMQQTV WADQDTTFQE ITADSAIEIP DVTVSKQLMR MHVHNLLNIL SPKERGIIRL
501: RFGIEDGEEK TLSDIGKVFG LTKERVRQLE SRALLKLRQC LESQGLDAYT DLLV

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.