Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66142 | Canola | nucleus | 57.59 | 93.2 |
| CDY18468 | Canola | plastid | 87.57 | 88.05 |
| Bra017213.1-P | Field mustard | plastid | 85.19 | 87.43 |
| CDX79708 | Canola | endoplasmic reticulum, extracellular | 22.12 | 81.21 |
| GSMUA_Achr4P30300_001 | Banana | nucleus | 22.12 | 60.2 |
| VIT_08s0040g01560.t01 | Wine grape | plastid | 58.87 | 57.4 |
| Solyc09g008040.2.1 | Tomato | nucleus, plastid | 55.03 | 53.46 |
| PGSC0003DMT400055506 | Potato | nucleus, plastid | 55.39 | 52.06 |
| KRH32532 | Soybean | nucleus, plastid | 54.48 | 51.83 |
| KRH67719 | Soybean | nucleus | 51.74 | 51.08 |
| KRH19920 | Soybean | plastid | 53.56 | 51.05 |
| KRG96007 | Soybean | nucleus | 51.55 | 50.9 |
| GSMUA_Achr11P... | Banana | nucleus | 46.44 | 43.87 |
| Os08t0242800-01 | Rice | plastid | 40.77 | 38.99 |
| TraesCS5D01G551200.1 | Wheat | plastid | 39.12 | 38.28 |
| KXG37075 | Sorghum | plastid | 38.57 | 38.02 |
| TraesCS5B01G563800.2 | Wheat | plastid | 38.76 | 37.66 |
| TraesCS4A01G315700.3 | Wheat | plastid | 38.76 | 37.46 |
| HORVU5Hr1G125110.10 | Barley | plastid | 37.84 | 37.43 |
| Zm00001d012810_P003 | Maize | plastid | 25.41 | 32.48 |
| AT1G08540.1 | Thale cress | plastid | 29.8 | 28.5 |
| AT5G13730.1 | Thale cress | plastid | 20.48 | 26.73 |
| AT1G64860.1 | Thale cress | nucleus | 21.39 | 23.31 |
| AT5G24120.3 | Thale cress | nucleus | 20.29 | 21.47 |
| AT3G53920.1 | Thale cress | plastid | 20.11 | 19.26 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.601.10 | MapMan:15.6.2.1 | EntrezGene:818273 | ProteinID:AAD31584.2 | EMBL:AB029916 |
| ProteinID:AEC09332.1 | EMBL:AJ250812 | EMBL:AJ277389 | ArrayExpress:AT2G36990 | EnsemblPlantsGene:AT2G36990 | RefSeq:AT2G36990 |
| TAIR:AT2G36990 | RefSeq:AT2G36990-TAIR-G | EnsemblPlants:AT2G36990.1 | TAIR:AT2G36990.1 | EMBL:AY059768 | EMBL:AY091182 |
| Unigene:At.1453 | GO:GO:0001053 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006352 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016987 | GO:GO:0045893 | GO:GO:0071482 | GO:GO:0071483 |
| GO:GO:0090351 | GO:GO:2000142 | InterPro:IPR036388 | RefSeq:NP_565856.1 | PFAM:PF04539 | PFAM:PF04542 |
| PFAM:PF04545 | PIRSF:PIRSF000767 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00046 |
| ScanProsite:PS00715 | ScanProsite:PS00716 | PANTHER:PTHR30603 | PANTHER:PTHR30603:SF9 | UniProt:Q9LD95 | InterPro:RNA_pol_sigma-70_dom |
| InterPro:RNA_pol_sigma70 | InterPro:RNA_pol_sigma70_r2 | InterPro:RNA_pol_sigma70_r3 | InterPro:RNA_pol_sigma70_r4 | InterPro:RNA_pol_sigma_SigB/C/D/F | InterPro:RNA_pol_sigma_r2 |
| InterPro:RNA_pol_sigma_r3/r4-like | Symbol:SIGF | SUPFAM:SSF88659 | SUPFAM:SSF88946 | TIGRFAMs:TIGR02937 | UniParc:UPI000009C68B |
| InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
Coordinates
chr2:-:15537225..15540139
Molecular Weight (calculated)
61800.7 Da
IEP (calculated)
9.900
GRAVY (calculated)
-0.627
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.