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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • nucleus 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:cytosol, nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra006747.1-P
Bra012880.1-P
Bra020357.1-P
Bra036850.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G36990.1 Bra012880.1-P AT3G50910.1 21798944
AT2G36990.1 Bra036850.1-P AT3G50910.1 21798944
AT2G36990.1 Bra006747.1-P AT5G58720.1 21798944
AT2G36990.1 Bra020357.1-P AT5G58720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY18468 Canola plastid 98.31 96.32
AT2G36990.1 Thale cress plastid 87.43 85.19
GSMUA_Achr4P30300_001 Banana nucleus 22.7 60.2
VIT_08s0040g01560.t01 Wine grape plastid 57.79 54.9
Solyc09g008040.2.1 Tomato nucleus, plastid 55.91 52.93
PGSC0003DMT400055506 Potato nucleus, plastid 56.66 51.89
KRG96007 Soybean nucleus 52.72 50.72
KRH67719 Soybean nucleus 52.53 50.54
KRH32532 Soybean nucleus, plastid 53.85 49.91
KRH19920 Soybean plastid 53.28 49.48
GSMUA_Achr11P... Banana nucleus 48.41 44.56
Os08t0242800-01 Rice plastid 41.65 38.81
KXG37075 Sorghum plastid 39.77 38.2
TraesCS4A01G315700.3 Wheat plastid 40.53 38.16
TraesCS5D01G551200.1 Wheat plastid 39.96 38.1
TraesCS5B01G563800.2 Wheat plastid 40.15 38.01
HORVU5Hr1G125110.10 Barley plastid 39.21 37.79
Zm00001d012810_P003 Maize plastid 25.33 31.54
Bra018617.1-P Field mustard plastid 30.77 28.62
Bra030732.1-P Field mustard plastid 30.39 28.42
Bra008807.1-P Field mustard plastid 20.45 26.85
Bra008513.1-P Field mustard nucleus 21.95 23.78
Bra026466.1-P Field mustard nucleus 20.07 22.02
Bra009735.1-P Field mustard plastid 20.64 21.57
Bra014857.1-P Field mustard nucleus, plastid 19.7 19.2
Bra023430.1-P Field mustard plastid 21.01 15.41
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.10.601.10MapMan:15.6.2.1EnsemblPlantsGene:Bra017213EnsemblPlants:Bra017213.1EnsemblPlants:Bra017213.1-P
GO:GO:0001053GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0006351
GO:GO:0006352GO:GO:0006355GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009536GO:GO:0009628GO:GO:0009791GO:GO:0009987GO:GO:0016043
GO:GO:0016987GO:GO:0045893GO:GO:0071482GO:GO:0071483GO:GO:0090351GO:GO:2000142
InterPro:IPR036388UniProt:M4DL32PFAM:PF04539PFAM:PF04542PFAM:PF04545PIRSF:PIRSF000767
PRINTS:PR00046ScanProsite:PS00715ScanProsite:PS00716PANTHER:PTHR30603PANTHER:PTHR30603:SF9InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70InterPro:RNA_pol_sigma70_r2InterPro:RNA_pol_sigma70_r3InterPro:RNA_pol_sigma70_r4InterPro:RNA_pol_sigma_SigB/C/D/FInterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-likeSUPFAM:SSF88659SUPFAM:SSF88946TIGRFAMs:TIGR02937UniParc:UPI000254442BInterPro:WH-like_DNA-bd_sf
SEG:seg:::::
Description
AT2G36990 (E=3e-184) SIGF, SIG6, ATSIG6, SOLDAT8 | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor
Coordinates
chrA04:-:16013945..16017147
Molecular Weight (calculated)
60048.9 Da
IEP (calculated)
10.133
GRAVY (calculated)
-0.586
Length
533 amino acids
Sequence
(BLAST)
001: MEATTKNLVS SSPSFPTKTH LKNGFSSPSS VVMLHEQTAT PVINSRHLAS LSRHFPASVL SQEPREESRP PPLSHSLRED RTSQQLTLER RQFDGLVSSR
101: EDEKFEQQLL QSAGLWNLLL SPSPTVVSPL EDAVALAHKA LSASKQAALL AEDSETAAPP TSSSMSLEEG TVVRSKKLLE RRARNRRAPK PNGLDNESSY
201: LPQKSNAKKK MRQGFDNDDS LQLFLWGPET KQLLTAKEEA ELITHIQNLI KLEKVKTKLE SQNGCEPTIA EWAEALGISG PVLKSEIHRG RSSREKLITA
301: NLRLVVHIAK QYQNRGLNFQ DLLQEGSMGL MKSVEKFKPQ SGFRFATYAY WWIRQSIRKS IFQNSRTIRL PENVYMLLGK VSEARKTCVQ EGNYLPSKEE
401: LAGHVGVSTE KLDKLLYNTR TPLSMQQPIW SDQDITFQEV TPDSGIETPD MSVGKQMMRN HVRNLLNVLS PKERKIIKLR FGIDGGKQRS LSEIGEIYGL
501: SKERVRQLES RALYRLKQNM NSHGLNAYAD LLV
Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)
001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV
Arabidopsis Description
SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.