Factsheet for Bra026466.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19846	Canola	nucleus	98.35	97.95
Bra009735.1-P	Field mustard	plastid	86.63	82.55
AT5G24120.3	Thale cress	nucleus	86.01	80.85
KRH53442	Soybean	plastid	63.37	60.75
VIT_16s0050g02520.t01	Wine grape	plastid	64.61	60.62
PGSC0003DMT400023432	Potato	plastid	63.58	59.88
Solyc03g007370.2.1	Tomato	plastid	62.35	58.84
KRH64502	Soybean	plastid	62.76	58.77
KRH18145	Soybean	mitochondrion, nucleus	61.73	58.59
KRH16520	Soybean	mitochondrion, nucleus	61.32	58.2
GSMUA_Achr7P24590_001	Banana	plastid	57.61	55.45
EES18781	Sorghum	plastid	48.77	47.31
Zm00001d039194_P001	Maize	plastid	48.35	47.28
TraesCS1A01G426700.1	Wheat	plastid	47.94	47.17
TraesCS1D01G436500.1	Wheat	plastid	47.74	46.96
TraesCS1B01G461600.1	Wheat	plastid	47.53	46.95
Os05t0586600-01	Rice	plastid	31.69	43.38
Bra008513.1-P	Field mustard	nucleus	20.78	20.53
Bra030732.1-P	Field mustard	plastid	23.66	20.18
Bra017213.1-P	Field mustard	plastid	22.02	20.07
Bra018617.1-P	Field mustard	plastid	23.25	19.72
Bra008807.1-P	Field mustard	plastid	16.26	19.46
Bra014857.1-P	Field mustard	nucleus, plastid	18.52	16.45
Bra023430.1-P	Field mustard	plastid	15.02	10.04

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	EnsemblPlantsGene:Bra026466	EnsemblPlants:Bra026466.1	EnsemblPlants:Bra026466.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	UniProt:M4ECF7
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF4
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0002546FBF	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT5G24120 (E=1e-192) SIGE, SIG5, ATSIG5 | SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor

Coordinates

chrA01:-:9136272..9139270

Molecular Weight (calculated)

56026.6 Da

IEP (calculated)

10.673

GRAVY (calculated)

-0.592

Length

486 amino acids

Sequence
(BLAST)

001: MKQNLIGRRI SDTAKLPSIV AFKADESTNS SLIVPREQEK QKEKRVVTRR KPCKDQNLPP LGLDYNEAAA RLESIYKLSP PATSLEEDVI DASKGKVSRR
101: RKRKESGGGE EKKVVVRSNV KKEKRLNLDK RIALKRNVQE KPVIIASAQK KVTRRQQEEE KIERLVRDYS ASNDVVSLDW KKMKIPPVLS STEHTWLFKL
201: MQPMKALLEV KDELQKSLGR EAREAEIARE INMSLAEVKM KIKVGKAARN KLIKHNLRLV LFVMNKYFQD FTNGPKFQDL CQAGMRGLIT AIDRFEPKRK
301: FRLSTYGLFW IRHAIIRSMT TSNFTRVPFG LESVRVEIYK AKMELLFELG RLPTEEEVVE RLKISPERYR EVLRAAKPVY SLNTKHSVTQ EEFINGITDV
401: DGVGADNRRQ PALLRLALDD VLDSLKPKES LVIRQRYGLD GKGDRTLGEI AGNLNISREM VRKHEVKALM KLKHQARVDY LRQYII

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.