Factsheet for Bra014857.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76185	Canola	plastid	94.52	77.16
AT3G53920.1	Thale cress	plastid	78.98	75.66
PGSC0003DMT400010456	Potato	nucleus	5.85	46.38
PGSC0003DMT400065483	Potato	mitochondrion	45.52	44.86
Solyc08g065970.2.1	Tomato	nucleus	44.61	44.28
VIT_04s0008g00600.t01	Wine grape	plastid	45.16	44.03
KRH04862	Soybean	mitochondrion	42.96	42.65
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	29.8	39.47
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	36.38	34.91
TraesCS1A01G431600.2	Wheat	plastid	30.71	29.47
Zm00001d039181_P001	Maize	nucleus	29.98	29.03
TraesCS1B01G467100.1	Wheat	plastid	30.16	29.0
TraesCS1D01G440900.1	Wheat	plastid	30.53	28.89
EES18778	Sorghum	plastid	29.62	27.46
Os05t0589200-01	Rice	plasma membrane	22.3	26.29
Bra008807.1-P	Field mustard	plastid	18.1	24.38
Bra018617.1-P	Field mustard	plastid	24.13	23.04
Bra030732.1-P	Field mustard	plastid	23.22	22.28
Bra017213.1-P	Field mustard	plastid	19.2	19.7
Bra026466.1-P	Field mustard	nucleus	16.45	18.52
Bra009735.1-P	Field mustard	plastid	17.0	18.24
Bra008513.1-P	Field mustard	nucleus	14.99	16.67
Bra023430.1-P	Field mustard	plastid	16.64	12.52

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	EnsemblPlantsGene:Bra014857	EnsemblPlants:Bra014857.1	EnsemblPlants:Bra014857.1-P
GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0016987	GO:GO:0071482	GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388
UniProt:M4DED6	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046	PANTHER:PTHR30603
PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI00025450B7
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT3G53920 (E=1e-219) SIGC, SIG3 | SIGC (RNA POLYMERASE SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor

Coordinates

chrA04:+:3641438..3644288

Molecular Weight (calculated)

61947.8 Da

IEP (calculated)

10.301

GRAVY (calculated)

-0.515

Length

547 amino acids

Sequence
(BLAST)

001: MVGSSSSSSS ASRPRILVRS SMASTNSLCT SASFDQTLAL SLEMRPNSSP LLRIASRWSF LSSLKEETRF HQRDHPLKAC GCASATAENV YVELKDPKEN
101: IGVGLVGERM SSSSSEKANL SRSMLQYNLL GKNLLALEQT FVALESLRME RDIMLQMRKL GAAELFNTCL SRSRASSTAS CLPDTGTPEL VDTTEEQKTF
201: VHSTRKLRKK ARRSSLMTGS DDLGSRTIWE GVDVPRVRKP SKYRKKRERI SRNEAEMSQG VKLVADMERI RTKLEEESGK VASMICWAEA AGMNEKLLMR
301: NLHFGWYCRD ELVKSTRSLV LFLARNYRGL GIAHEDLIQA GYVGVLQGAE RFDHTRGYKF STYVQYWIRK AMSTMESRHA RGVHIPASII RTMSQIQKAR
401: KTLKTSQGIK YPADEEISKL TGYSLKKIRA ANQCLKVVGS IDKKVGDCFT TKFLEFTPDT TMESPEEAVM RQSARREVHN LIEGLEAREK QVMVLRYGLE
501: DYRPKSLEEI GKLLRVSKEG IRKIERRAMA KIRDQPKADN LRYYLNQ

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.