Factsheet for PGSC0003DMT400065483

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010456	Potato	nucleus	12.43	100.0
Solyc08g065970.2.1	Tomato	nucleus	95.14	95.83
VIT_04s0008g00600.t01	Wine grape	plastid	52.97	52.41
Bra014857.1-P	Field mustard	nucleus, plastid	44.86	45.52
AT3G53920.1	Thale cress	plastid	45.05	43.78
KRH04862	Soybean	mitochondrion	43.06	43.38
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	31.17	41.89
CDX76185	Canola	plastid	45.41	37.61
CDY13153	Canola	plastid	45.05	37.2
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	36.4	35.44
PGSC0003DMT400017455	Potato	nucleus	15.86	32.12
TraesCS1D01G440900.1	Wheat	plastid	32.43	31.14
TraesCS1B01G467100.1	Wheat	plastid	31.17	30.4
Os05t0589200-01	Rice	plasma membrane	25.23	30.17
TraesCS1A01G431600.2	Wheat	plastid	30.81	30.0
Zm00001d039181_P001	Maize	nucleus	28.83	28.32
EES18778	Sorghum	plastid	29.19	27.46
PGSC0003DMT400079883	Potato	plastid	24.86	22.51
PGSC0003DMT400055506	Potato	nucleus, plastid	21.44	20.45
PGSC0003DMT400069555	Potato	nucleus	17.84	19.6
PGSC0003DMT400023432	Potato	plastid	16.76	18.02
PGSC0003DMT400068109	Potato	nucleus	15.86	14.43

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:102599083	MapMan:15.6.2.1	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0016987	GO:GO:0071482
GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	UniProt:M1CE25	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	EnsemblPlantsGene:PGSC0003DMG400025465	PGSC:PGSC0003DMG400025465	EnsemblPlants:PGSC0003DMT400065483	PRINTS:PR00046	ScanProsite:PS00716
PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
UniParc:UPI00029659BB	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_006355305.1	SEG:seg	:	:

Description

RNA polymerase sigma factor rpoD [Source:PGSC_GENE;Acc:PGSC0003DMG400025465]

Coordinates

chr8:+:37420961..37426560

Molecular Weight (calculated)

63532.1 Da

IEP (calculated)

10.173

GRAVY (calculated)

-0.560

Length

555 amino acids

Sequence
(BLAST)

001: MGFRLHLKWG FSVQPPFSSN SSSWPSSHSF KGREALYDPA RSLKPFITGD CEPSHSDPFR VQTCLSDPQL WTSDTSVTTE IKTRNGRGSP SNVYGDIGSH
101: KIGISPDGEK PTYLNTTKSL HFSLLMKNLD LLENMFADSE MSRLERDILV QLEKLGALEF FHTCLSRTHH SSTFPKVLDV PRELIKEVEK DDLVGNAIDK
201: VVVRSRKKQE RKSRRNRASR NANDIITVQP HTKNIQEDLQ QPKFYSGKRT QASRNKRQKI AKNEAEMSRG VKLVAQLERI RSILEEETGR VATFSSWAEA
301: AGIEQKELQQ RLHFGWYCRD ELLKSTRSLV LYLARNYRGL GVAFEDLIQA GNMGVLQGAV RFDHTRGYKF STYVQYWIRK SLSKLVAQHA RGVRIPFTIC
401: KVINQIHKAR KTLSRSHGKF PADDEIAKFT GLSTARIAMA SKCLRVVGSI DQKVGDCISA KVLELTPDKS ITSPEETVMR QDIVDNMYSL LESLDPKEQQ
501: VIYFRFGLET HQRKSLEEIG RLYGVSKEWI RRIERRALTK LRNADYFQHI THYSM

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.