Factsheet for Solyc08g065970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010456	Potato	nucleus	11.98	95.65
PGSC0003DMT400065483	Potato	mitochondrion	95.83	95.14
VIT_04s0008g00600.t01	Wine grape	plastid	52.45	51.52
Bra014857.1-P	Field mustard	nucleus, plastid	44.28	44.61
AT3G53920.1	Thale cress	plastid	45.01	43.43
KRH04862	Soybean	mitochondrion	43.01	43.01
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	31.22	41.65
CDX76185	Canola	plastid	45.01	37.01
CDY13153	Canola	plastid	44.65	36.61
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	35.75	34.56
TraesCS1D01G440900.1	Wheat	plastid	32.49	30.97
TraesCS1B01G467100.1	Wheat	plastid	31.4	30.4
Os05t0589200-01	Rice	plasma membrane	25.41	30.17
TraesCS1A01G431600.2	Wheat	plastid	31.03	30.0
Zm00001d039181_P001	Maize	nucleus	28.68	27.96
EES18778	Sorghum	plastid	29.04	27.12
Solyc01g087690.1.1	Tomato	nucleus	19.96	26.13
Solyc01g081490.2.1	Tomato	nucleus	24.68	22.19
Solyc09g008040.2.1	Tomato	nucleus, plastid	21.6	21.14
Solyc06g072710.2.1	Tomato	nucleus	18.33	20.0
Solyc03g097320.2.1	Tomato	nucleus, plastid	17.6	19.06
Solyc03g007370.2.1	Tomato	plastid	16.52	17.67

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0016987	GO:GO:0071482	GO:GO:2000142
GO:GO:2001141	InterPro:IPR036388	UniProt:K4CLH5	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	EnsemblPlantsGene:Solyc08g065970.2	EnsemblPlants:Solyc08g065970.2.1	TIGRFAMs:TIGR02937	UniParc:UPI000276B8AC	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

RNA polymerase sigma factor sigC [Source:Projected from Arabidopsis thaliana (AT3G53920) UniProtKB/Swiss-Prot;Acc:O24621]

Coordinates

chr8:+:54369657..54375009

Molecular Weight (calculated)

63173.8 Da

IEP (calculated)

10.136

GRAVY (calculated)

-0.540

Length

551 amino acids

Sequence
(BLAST)

001: MGFRLHLKWG FSLQPPFSSN SSSWPSSHSF KGRETLYDPA RSLKPFINGD CEPSHSDPFR VQTCLSDPQL WTSDASVTTE TKTRNGRGSP SNVYGDIGSY
101: KIDGEKPTYL NTTKSLHFSL LMKNLDLLEN MFADSEMSRL ERDILVQLEK LGALEFFHTC LSRTHHSSSF PKVLDVPREL IKEVEKDDLV GNAMDKVVVR
201: SRKKQERMSR RKRASRNAND IITVQPHTKN IQEDLQQLKF YSGKRTHASR TKRQKIAKNE AEMSKGVKLV AQLERIRSIL EEETGQVATF SSWAKAAGIE
301: QKELQQHLHF GWYCRDELLK STRSLVLYLA RNYRGLGVAF EDLIQAGNMG VLQGAVRFDH TRGYKFSTYV QYWIRKSLSK LVAQHARGVR IPFTICKVIN
401: QIHKARKTLS RSHGKFPADD EIAKFTGLST ARIAMASKCL RVVGSIDQKV GDCINAKVLE LTPDKSVTSP EEFVMRQDIV DNMYALLESL DPKEQQVIYF
501: RFGLETHQRK SLEEIGRLYG VSKEWIRRIE RRALTKLRSA DYFQHITHYS L

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.