Factsheet for Solyc01g081490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
nucleus 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079883	Potato	plastid	97.55	97.55
VIT_15s0024g00640.t01	Wine grape	plastid	66.56	70.96
KRH51354	Soybean	nucleus	54.49	66.8
KRH60664	Soybean	nucleus	59.05	64.18
GSMUA_Achr7P04860_001	Banana	nucleus	56.93	63.69
AT1G08540.1	Thale cress	plastid	58.56	62.76
Bra030732.1-P	Field mustard	plastid	58.24	62.63
CDY31138	Canola	plastid	58.08	62.13
CDX97496	Canola	plastid	57.75	62.0
CDX93555	Canola	plastid	57.42	61.43
Bra018617.1-P	Field mustard	plastid	57.1	61.08
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	54.49	60.95
CDX95052	Canola	plastid	57.91	60.89
HORVU4Hr1G045100.1	Barley	nucleus	9.62	56.19
Os11t0448400-02	Rice	nucleus	35.89	52.01
HORVU4Hr1G044910.10	Barley	nucleus	39.15	50.31
OQU83379	Sorghum	plastid	43.39	49.53
Zm00001d049160_P002	Maize	plastid	42.9	47.56
TraesCS4B01G163500.1	Wheat	plastid	41.92	47.07
TraesCS4A01G157100.1	Wheat	plastid	41.92	46.64
TraesCS4D01G154500.2	Wheat	plastid	41.92	45.73
EER95113	Sorghum	plastid	38.17	44.32
Os03t0271100-01	Rice	mitochondrion	38.83	44.07
HORVU4Hr1G060200.1	Barley	plastid	39.31	43.98
TraesCS4B01G209300.1	Wheat	plastid	38.34	42.96
TraesCS4A01G095200.1	Wheat	plastid	38.34	42.88
TraesCS4D01G210000.1	Wheat	plastid	38.34	42.88
Zm00001d028585_P001	Maize	plastid	36.87	42.8
Solyc01g087690.1.1	Tomato	nucleus	20.39	29.69
Solyc09g008040.2.1	Tomato	nucleus, plastid	25.61	27.89
Solyc06g072710.2.1	Tomato	nucleus	20.72	25.15
Solyc03g097320.2.1	Tomato	nucleus, plastid	20.72	24.95
Solyc08g065970.2.1	Tomato	nucleus	22.19	24.68
Solyc03g007370.2.1	Tomato	plastid	19.41	23.11

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0006399
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009658	GO:GO:0009987	GO:GO:0010114	GO:GO:0016043	GO:GO:0016987	GO:GO:0071482
GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	UniProt:K4AY41	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	EnsemblPlantsGene:Solyc01g081490.2	EnsemblPlants:Solyc01g081490.2.1
TIGRFAMs:TIGR02937	UniParc:UPI0002762B7F	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:K4AY41]

Coordinates

chr1:+:80688400..80694078

Molecular Weight (calculated)

67750.0 Da

IEP (calculated)

9.658

GRAVY (calculated)

-0.429

Length

613 amino acids

Sequence
(BLAST)

001: MSYLLPQFLS LPDAFVICAK TQQQTTIQLS KSRDSIHLRT QCILSTTSAV TSTATSTVLG IEKLQLPSIE ILSNSVAAER SWKSPSAATT TVPGIQKLKL
101: PSFEANPDSV APDRPWTYTG AVGPPAEANT KPEDSLASEE AIVAAAAAEA VALAKAALKG AQDAVMLVGY NNLKDSDNVG RGTLSEARTA PFESVHLAQP
201: GETRGVGVCA ELNGSEMKWT GSSLFRDTLT DSDDLEPSHE ELEILQSQLS NVIAVKSNRQ TERKARRAKA VERAAANVVS VKSGSTSRKK RASVQDVDYS
301: DPLRYLRGTT CSSRLLTASE EQELSRGIQD LLKLERLQVE LTERCGGQPT FTQWAAAAGV DQMTLRKRLN YGILCKDKMI KSNVRLVISI AKNYQGVGMN
401: LQDLVQEGCR GLVRGAEKFD ATKGFKFSTY AHWWIKQAVR KSLSDQSRTI RLPFHMVEAT YRVKEARKQL LTENGRHPND AEVAEATGLS MKRLAAVMLT
501: PKAPRSLDQK VGFNESLKPS EVLADPDAET SEEILTKQFM RQDLEKVLDT LNPREKQVVR WRFGLEDGRM KTLQEIGELM GVSRERIRQI ESCAFRKLKN
601: KKRTKFLQQY INA

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.