Factsheet for VIT_15s0024g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51354	Soybean	nucleus	63.48	73.0
KRH60664	Soybean	nucleus	68.17	69.5
Bra030732.1-P	Field mustard	plastid	67.3	67.89
CDY31138	Canola	plastid	67.48	67.71
GSMUA_Achr7P04860_001	Banana	nucleus	64.52	67.7
CDX97496	Canola	plastid	66.78	67.25
AT1G08540.1	Thale cress	plastid	66.78	67.13
Solyc01g081490.2.1	Tomato	nucleus	70.96	66.56
CDX93555	Canola	plastid	66.26	66.49
Bra018617.1-P	Field mustard	plastid	65.74	65.97
PGSC0003DMT400079883	Potato	plastid	70.26	65.91
CDX95052	Canola	plastid	65.91	65.01
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	61.39	64.42
Os11t0448400-02	Rice	nucleus	38.43	52.25
OQU83379	Sorghum	plastid	46.61	49.91
HORVU4Hr1G044910.10	Barley	nucleus	41.39	49.9
Zm00001d049160_P002	Maize	plastid	46.96	48.82
HORVU4Hr1G045100.1	Barley	nucleus	8.87	48.57
TraesCS4B01G163500.1	Wheat	plastid	44.52	46.89
TraesCS4A01G157100.1	Wheat	plastid	44.87	46.82
TraesCS4D01G154500.2	Wheat	plastid	44.7	45.73
Zm00001d028585_P001	Maize	plastid	41.74	45.45
EER95113	Sorghum	plastid	41.74	45.45
HORVU4Hr1G060200.1	Barley	plastid	42.61	44.71
Os03t0271100-01	Rice	mitochondrion	41.91	44.63
TraesCS4B01G209300.1	Wheat	plastid	42.09	44.24
TraesCS4A01G095200.1	Wheat	plastid	41.91	43.98
TraesCS4D01G210000.1	Wheat	plastid	41.74	43.8
VIT_13s0064g00190.t01	Wine grape	nucleus	19.3	34.8
VIT_08s0040g01560.t01	Wine grape	plastid	29.57	30.3
VIT_04s0008g00600.t01	Wine grape	plastid	24.7	25.31
VIT_16s0039g00660.t01	Wine grape	plastid	23.65	23.53
VIT_16s0050g02520.t01	Wine grape	plastid	20.7	22.97

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100243819	wikigene:100243819	MapMan:15.6.2.1	ProteinID:CBI40014
ProteinID:CBI40014.3	ncoils:Coil	UniProt:D7UB90	EMBL:FN596748	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	EntrezGene:LOC100243819	wikigene:LOC100243819
PFAM:PF00140	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r1_2
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0001BE55E9	ArrayExpress:VIT_15s0024g00640	EnsemblPlantsGene:VIT_15s0024g00640
EnsemblPlants:VIT_15s0024g00640.t01	unigene:Vvi.15436	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002273602	RefSeq:XP_002273602.1	RefSeq:XP_010661180.1
SEG:seg	:	:	:	:	:

Description

RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:D7UB90]

Coordinates

chr15:-:1093859..1099408

Molecular Weight (calculated)

64470.0 Da

IEP (calculated)

9.767

GRAVY (calculated)

-0.511

Length

575 amino acids

Sequence
(BLAST)

001: MSCLLPQFKC PPDTFSTHPK LHILSKNREA IYFRVQCALS TTSPPLSTST TAVLDIEKLR LPSLESHSNS VAAHRPWTYI GVVGPPTEAN FEATLARETL
101: LTSEEAVIAA AAAEAVALAK AAVKVAKDAA RLVGKNNSAK SETKPASFLS GDDTSQFRRI QFTETERIGI LGDSVGAETG MVDYNSLQDV TEDSDDLEPT
201: LEELELLEAE FSKSIVVRSN RQVERKARRA RAAEKASAGV VSVRSGSTSR RKRVSLQEVD YSDPLRYLRG TTSTSRLLTA TEELELSEGI QDLLKLEKLQ
301: EDLEERFGVK PTFAQWAAAA GVDQKTLRRR TNYGIRCKDK MIKSNIRLVI SIAKNYQGAG MNIQDLVQEG CRGLVRGAEK FDASKGFKFS TYAHWWIKQA
401: VRKSLSDQSR TIRLPFHMVE ATYRVKEARK QLYSENGRHP NNEEVAEATG LSMKRLNAVL LTPKAPRSLD QKIGINQNLK PSEVIADPDA ETAEELLIKQ
501: FMREDLEKVL NSLNPREKQV IRWRYGLEDG RTKTLQEIGE LMGVSRERIR QIESCAFRKL KNKRRTKHLQ QYLVS

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.