CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049160_P002	Maize	plastid	94.04	91.32
Os11t0448400-02	Rice	nucleus	67.41	85.58
HORVU4Hr1G044910.10	Barley	nucleus	72.44	81.55
TraesCS4B01G163500.1	Wheat	plastid	78.21	76.92
TraesCS4A01G157100.1	Wheat	plastid	78.21	76.22
TraesCS4D01G154500.2	Wheat	plastid	78.58	75.09
EER95113	Sorghum	plastid	59.59	60.61
KRH51354	Soybean	nucleus	45.25	48.6
GSMUA_Achr7P04860_001	Banana	nucleus	48.6	47.63
VIT_15s0024g00640.t01	Wine grape	plastid	49.91	46.61
KRH60664	Soybean	nucleus	47.3	45.04
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	45.81	44.89
Solyc01g081490.2.1	Tomato	nucleus	49.53	43.39
AT1G08540.1	Thale cress	plastid	46.18	43.36
CDX93555	Canola	plastid	46.18	43.28
CDY31138	Canola	plastid	46.0	43.11
Bra018617.1-P	Field mustard	plastid	46.0	43.11
CDX97496	Canola	plastid	45.81	43.08
Bra030732.1-P	Field mustard	plastid	45.62	42.98
PGSC0003DMT400079883	Potato	plastid	48.98	42.9
CDX95052	Canola	plastid	46.37	42.71
KXG37075	Sorghum	plastid	26.44	25.59
EES18778	Sorghum	plastid	25.7	23.39
EES13412	Sorghum	plastid	21.23	22.8
EES18781	Sorghum	plastid	19.18	20.56

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	UniProt:A0A1Z5RIF0	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	EnsemblPlants:OQU83379	ProteinID:OQU83379
ProteinID:OQU83379.1	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	EnsemblPlantsGene:SORBI_3005G110481
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000B42492A	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:30621641..30638515

Molecular Weight (calculated)

59938.8 Da

IEP (calculated)

9.952

GRAVY (calculated)

-0.446

Length

537 amino acids

Sequence
(BLAST)

001: MACLAPQFLW APSAAAHVPS SSSSYSRCSA LRVHCAVTSA VVVEDRTNRS AAQLKLAYAA PAIQRNLEAT LASEALLNEE AVVAAAAAEA VALARAAAEA
101: VQEVVQMVQK NNHQPVIRQK KGVDNYLANE ILRTEMQSSS PDMYANNSLM EDLESYGIMA SEDELDAYAQ YAENIAVKSA RQSERRARRT RAAIKASTTR
201: CASQKAASSS KKKRSKGSSS SMNPLGSLWK MTGRRLLTAK EEVEFSEGIQ DLLKLEAIQA ELTEYNGGQP TFSQWATAAG VDEKTLRKHL NYGIYCKNRM
301: VTSNVRLVIS IAREFEGPGM DLYDLIQEGM QGLIRGAEKF DASKGFRFST YSHWWIKQAM RKSVSEQSQI FRLPAHMVEA SYRVKECTKR LRRKLRRRPT
401: NEEIALDTGM PIKRVEAAVN LPKYSVSLDS KIGSTDMTYQ EVTADPSAET AEEMLNRMSM KKDVHKALDT LTTREKQVVV LRFGLEDDRI RTLQEIGNIM
501: GVSRERIRQI ESGAFRKLRS KKRVKALKDY LVPVGNW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.