Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60664 | Soybean | nucleus | 96.2 | 85.28 |
| VIT_15s0024g00640.t01 | Wine grape | plastid | 73.0 | 63.48 |
| GSMUA_Achr7P04860_001 | Banana | nucleus | 65.6 | 59.85 |
| GSMUA_Achr7P17330_001 | Banana | nucleus, plastid | 62.8 | 57.3 |
| CDY31138 | Canola | plastid | 65.6 | 57.24 |
| CDX97496 | Canola | plastid | 65.2 | 57.09 |
| Bra030732.1-P | Field mustard | plastid | 65.0 | 57.02 |
| CDX93555 | Canola | plastid | 64.8 | 56.54 |
| Bra018617.1-P | Field mustard | plastid | 64.8 | 56.54 |
| AT1G08540.1 | Thale cress | plastid | 64.6 | 56.47 |
| CDX95052 | Canola | plastid | 65.4 | 56.09 |
| Solyc01g081490.2.1 | Tomato | nucleus | 66.8 | 54.49 |
| PGSC0003DMT400079883 | Potato | plastid | 66.4 | 54.16 |
| Os11t0448400-02 | Rice | nucleus | 42.2 | 49.88 |
| HORVU4Hr1G045100.1 | Barley | nucleus | 10.2 | 48.57 |
| HORVU4Hr1G044910.10 | Barley | nucleus | 46.0 | 48.22 |
| OQU83379 | Sorghum | plastid | 48.6 | 45.25 |
| Zm00001d049160_P002 | Maize | plastid | 48.6 | 43.94 |
| TraesCS4B01G163500.1 | Wheat | plastid | 47.8 | 43.77 |
| TraesCS4A01G157100.1 | Wheat | plastid | 48.2 | 43.74 |
| TraesCS4D01G154500.2 | Wheat | plastid | 48.2 | 42.88 |
| Os03t0271100-01 | Rice | mitochondrion | 44.8 | 41.48 |
| EER95113 | Sorghum | plastid | 43.8 | 41.48 |
| HORVU4Hr1G060200.1 | Barley | plastid | 44.8 | 40.88 |
| Zm00001d028585_P001 | Maize | plastid | 43.0 | 40.72 |
| TraesCS4D01G210000.1 | Wheat | plastid | 44.0 | 40.15 |
| TraesCS4B01G209300.1 | Wheat | plastid | 43.8 | 40.04 |
| TraesCS4A01G095200.1 | Wheat | plastid | 43.6 | 39.78 |
| KRG96007 | Soybean | nucleus | 30.4 | 27.44 |
| KRH67719 | Soybean | nucleus | 30.0 | 27.08 |
| KRH32532 | Soybean | nucleus, plastid | 30.8 | 26.78 |
| KRH19920 | Soybean | plastid | 30.2 | 26.31 |
| KRH04862 | Soybean | mitochondrion | 28.0 | 25.41 |
| KRH39837 | Soybean | plastid | 25.0 | 24.85 |
| KRH23963 | Soybean | plastid | 24.4 | 24.25 |
| KRH16276 | Soybean | golgi, mitochondrion, nucleus, plastid | 18.8 | 22.76 |
| KRH18145 | Soybean | mitochondrion, nucleus | 22.6 | 22.07 |
| KRH16520 | Soybean | mitochondrion, nucleus | 22.4 | 21.88 |
| KRH53442 | Soybean | plastid | 21.8 | 21.5 |
| KRH64502 | Soybean | plastid | 21.6 | 20.81 |
Protein Annotations
Description
hypothetical protein
Coordinates
chr6:+:154868..159057
Molecular Weight (calculated)
56113.4 Da
IEP (calculated)
10.260
GRAVY (calculated)
-0.555
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: KTRLNLCFQP QCVLSATSPS TLLSLEKKLA LDAPSDPNTS WPYIAAVAPP SPHLKANFKS TLSAESLLTN EEAVIAAAAS EALALAKAAV KVAKDAVLLV
101: KKKPPAEAEY KSHVSSKSDD LLLKWFHQME AEDGTASDNI AVRSRRLTER KAKRVRAAEK ATTNFASLKP GSSSRRKRVS MQEVDYSDPL RYLRTTTSAS
201: RLLTPTEEIK LSAGIQDLLK LEKIQEDLAE RFGDQPTFAQ WAAVAGVDQK TLRKRLNYGI FCKDKMIKSN IRLVISIAKN YQGSGMNLQD LVQEGCRGLV
301: KGAEKFDGTK GFKFSTYAHW WIKQAVRKSL SDQSRTIRLP FHMVEATYRV KEARKQLYSE NGRQPDDEEV AEATGLSMKR LNAVLMTPKA PRSLEQKIGI
401: NQNLKPSEVI SDPDAETAEE QLLKQFMKKD LEEALDSLNA RERQVVRWRF GMDDGRTKTL QEIGEMLGVS RERIRQIESS AFKKLKNKKR TNHLQQYLVS
101: KKKPPAEAEY KSHVSSKSDD LLLKWFHQME AEDGTASDNI AVRSRRLTER KAKRVRAAEK ATTNFASLKP GSSSRRKRVS MQEVDYSDPL RYLRTTTSAS
201: RLLTPTEEIK LSAGIQDLLK LEKIQEDLAE RFGDQPTFAQ WAAVAGVDQK TLRKRLNYGI FCKDKMIKSN IRLVISIAKN YQGSGMNLQD LVQEGCRGLV
301: KGAEKFDGTK GFKFSTYAHW WIKQAVRKSL SDQSRTIRLP FHMVEATYRV KEARKQLYSE NGRQPDDEEV AEATGLSMKR LNAVLMTPKA PRSLEQKIGI
401: NQNLKPSEVI SDPDAETAEE QLLKQFMKKD LEEALDSLNA RERQVVRWRF GMDDGRTKTL QEIGEMLGVS RERIRQIESS AFKKLKNKKR TNHLQQYLVS
001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS
Arabidopsis Description
SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.