Factsheet for HORVU4Hr1G060200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G209300.1	Wheat	plastid	95.8	95.98
TraesCS4D01G210000.1	Wheat	plastid	95.8	95.8
TraesCS4A01G095200.1	Wheat	plastid	95.26	95.26
Os03t0271100-01	Rice	mitochondrion	76.82	77.96
EER95113	Sorghum	plastid	72.45	75.19
Zm00001d028585_P001	Maize	plastid	70.8	73.48
HORVU4Hr1G045100.1	Barley	nucleus	12.77	66.67
HORVU4Hr1G044910.10	Barley	nucleus	56.75	65.2
KRH51354	Soybean	nucleus	40.88	44.8
VIT_15s0024g00640.t01	Wine grape	plastid	44.71	42.61
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	42.34	42.34
KRH60664	Soybean	nucleus	43.43	42.2
Bra030732.1-P	Field mustard	plastid	43.07	41.4
Bra018617.1-P	Field mustard	plastid	43.25	41.36
CDY31138	Canola	plastid	43.25	41.36
CDX93555	Canola	plastid	43.25	41.36
CDX97496	Canola	plastid	43.07	41.33
AT1G08540.1	Thale cress	plastid	42.7	40.91
GSMUA_Achr7P04860_001	Banana	nucleus	40.88	40.88
CDX95052	Canola	plastid	43.25	40.65
Solyc01g081490.2.1	Tomato	nucleus	43.98	39.31
PGSC0003DMT400079883	Potato	plastid	43.43	38.83
HORVU7Hr1G069520.2	Barley	nucleus	16.24	29.67
HORVU5Hr1G125110.10	Barley	plastid	24.45	24.23

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	ncoils:Coil	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	EnsemblPlantsGene:HORVU4Hr1G060200	EnsemblPlants:HORVU4Hr1G060200.1	InterPro:IPR036388
UniProt:M0XE63	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000295769B	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:M0XE63]

Coordinates

chrchr4H:-:504587032..504590258

Molecular Weight (calculated)

60660.4 Da

IEP (calculated)

9.406

GRAVY (calculated)

-0.485

Length

548 amino acids

Sequence
(BLAST)

001: MSSCLAPQFK WLPSTRAVVP REPGGGGCAA GGSCRPGRVQ CALSSAAVVE AERLESLAAE ARRLVYHGAV DAGLPPPSDN ASLPGDFGEA LLNQEAVVTA
101: AAAEAVALAR AAAEVAREVA RMVQTDDRPD VGDSHDVVED SYLTREVLRT EVRPGSRYAD ARLLDDTGFV SIFSDESESD DDEQGARGVA VKSARQPERK
201: ARRVRAAMKA AKSFSDRRPV MASSRKKRVK GCRNSLGCFY KMSGRKLLTA KQEVELSEGI QDLLKLEAIQ KEVAHYNGGE PTFGQWAAAA GTDENTLRKR
301: LSDGIYCKNM MVKSNVRLVI SIAKEFEGPG TEFSDLIQEG IQGLIRGAEK FDASKGFRFS TYSHWWIKQA IRKSVLEQTQ IIRLPAHMAE ASSRVKESRR
401: RLRRQLNRLP TNEEIALDTG MTARRVEAAM CLPRYSVSLT GKVGCTDVTY QEITADKSTE TAEETLHRLF MKKDVDKALD SLTPREREVI RYRFGMDDGK
501: ARTLHDIGQL MGVSRERIRQ IEMAAFRKLR SKKKVTSLQH YLEPAESW

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.