CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030732.1-P	Field mustard	plastid	96.86	97.37
CDX97496	Canola	plastid	96.68	97.02
CDX93555	Canola	plastid	89.01	89.01
CDX95052	Canola	plastid	89.53	87.99
AT1G08540.1	Thale cress	plastid	85.17	85.31
VIT_15s0024g00640.t01	Wine grape	plastid	67.71	67.48
KRH51354	Soybean	nucleus	57.24	65.6
KRH60664	Soybean	nucleus	60.56	61.52
GSMUA_Achr7P04860_001	Banana	nucleus	57.24	59.85
PGSC0003DMT400079883	Potato	plastid	62.3	58.24
Solyc01g081490.2.1	Tomato	nucleus	62.13	58.08
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	55.5	58.03
Os11t0448400-02	Rice	nucleus	38.22	51.77
HORVU4Hr1G045100.1	Barley	nucleus	9.08	49.52
HORVU4Hr1G044910.10	Barley	nucleus	40.49	48.64
OQU83379	Sorghum	plastid	43.11	46.0
TraesCS4B01G163500.1	Wheat	plastid	43.28	45.42
TraesCS4A01G157100.1	Wheat	plastid	43.63	45.37
Zm00001d049160_P002	Maize	plastid	43.11	44.67
TraesCS4D01G154500.2	Wheat	plastid	43.63	44.48
EER95113	Sorghum	plastid	40.49	43.94
Zm00001d028585_P001	Maize	plastid	39.97	43.37
HORVU4Hr1G060200.1	Barley	plastid	41.36	43.25
TraesCS4B01G209300.1	Wheat	plastid	41.01	42.96
TraesCS4A01G095200.1	Wheat	plastid	41.01	42.88
Os03t0271100-01	Rice	mitochondrion	40.31	42.78
TraesCS4D01G210000.1	Wheat	plastid	40.84	42.7
CDY66142	Canola	nucleus	21.99	37.28
CDX79708	Canola	endoplasmic reticulum, extracellular	7.68	29.53
CDY18468	Canola	plastid	27.92	29.41
CDX91100	Canola	plastid	19.37	27.14
CDX85630	Canola	plastid	19.2	26.96
CDY09826	Canola	plastid	19.55	26.73
CDY52962	Canola	nucleus	20.77	24.79
CDY56127	Canola	nucleus	20.94	24.44
CDX87140	Canola	plastid	20.94	23.86
CDY19846	Canola	nucleus	20.24	23.77
CDX80416	Canola	nucleus	20.42	20.86
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	20.24	19.76
CDX76185	Canola	plastid	22.86	19.55
CDY13153	Canola	plastid	22.16	18.9
CDY59157	Canola	cytosol	0.17	1.22
CDX73516	Canola	cytosol	0.17	1.22
CDY54028	Canola	cytosol	0.17	1.22
CDX67575	Canola	cytosol	0.17	1.22

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078H2Q8	UniProt:A0A078H2Q8	EnsemblPlants:CDY31138
ProteinID:CDY31138	ProteinID:CDY31138.1	ncoils:Coil	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043
GO:GO:0016987	GO:GO:2000142	EnsemblPlantsGene:GSBRNA2T00047226001	InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF25
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EDFC6C
InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:	:

Description

BnaA08g26880DRNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:A0A078H2Q8]

Coordinates

chrLK032267:-:393111..395789

Molecular Weight (calculated)

64269.7 Da

IEP (calculated)

9.914

GRAVY (calculated)

-0.602

Length

573 amino acids

Sequence
(BLAST)

001: MSSCLLPQFK CPPDSFSIQF RTSHSVSKHN KGTVFFQPQC AVSTSPPLLT SVLDVAKIRL PSFGTDSNPR VSDRQWTYTG TIGPSTEAKY LEAETLLTSD
101: EAVVAAAAAE ALALARAAVK VAKDATLYRN SYSTKLFVSS MAGEKRSKWD QFTEKERAGI LGHLAVSDTG VVSDRIISPP AAPECNKESS HDLESEKEEA
201: EPLEEEVSVS SAVRSTRQTE RKARRAKGLE KTASCMQSSV KTSSSSRKKR VASQEIDHND PLRYLRMTTS SSKLLTAREE TELSEGIQDL LKLERLQAEL
301: TERCGHQPTF GQWASAAGVD QKTLRKRINH GTQCKDRMIK SNIRLVISIA KNYQGAGMNL QDLVQEGCRG LVRGAEKFDA TKGFKFSTYA HWWIKQAVRK
401: SLSDQSRMIR LPFHMVEATY RVKEARKQLY SETGQQPKNE EVAEATGLSM KRLMAVLLAP KPPRSLDQKI GINLNLKPSE VISDPEAETS EDILIKQFMR
501: EDLDKVLDSL STREKQVIRW RFGMEDGRMK TLQEIGETMG VSRERVRQIE SSAFRKLKNK KRNNHLQQYL VSQ

Best Arabidopsis Sequence Match ( AT1G08540.1 )
(BLAST)

001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS

Arabidopsis Description

SIGBRNA polymerase sigma factor sigB [Source:UniProtKB/Swiss-Prot;Acc:O22056]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.