CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71154
CDX73773
CDX77962
CDX90677
CDY02832
CDY28989
CDY32688
CDY61025
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	CDX73773	AT3G50910.1	21798944
AT2G36990.1	CDX77962	AT3G50910.1	21798944
AT2G36990.1	CDX90677	AT3G50910.1	21798944
AT2G36990.1	CDY28989	AT3G50910.1	21798944
AT2G36990.1	CDY67893	AT3G50910.1	21798944
AT2G36990.1	CDX71154	AT5G58720.1	21798944
AT2G36990.1	CDY02832	AT5G58720.1	21798944
AT2G36990.1	CDY32688	AT5G58720.1	21798944
AT2G36990.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79708	Canola	endoplasmic reticulum, extracellular	34.02	77.18
CDY18468	Canola	plastid	99.41	61.76
GSMUA_Achr4P30300_001	Banana	nucleus	36.09	60.7
AT2G36990.1	Thale cress	plastid	93.2	57.59
Solyc09g008040.2.1	Tomato	nucleus, plastid	66.27	39.79
VIT_08s0040g01560.t01	Wine grape	plastid	65.38	39.39
PGSC0003DMT400055506	Potato	nucleus, plastid	66.86	38.83
KRG96007	Soybean	nucleus	61.24	37.36
KRH67719	Soybean	nucleus	60.95	37.18
KRH32532	Soybean	nucleus, plastid	62.13	36.52
KRH19920	Soybean	plastid	60.95	35.89
GSMUA_Achr11P...	Banana	nucleus	58.58	34.2
KXG37075	Sorghum	plastid	50.0	30.45
Os08t0242800-01	Rice	plastid	51.18	30.24
HORVU5Hr1G125110.10	Barley	plastid	49.41	30.2
TraesCS5D01G551200.1	Wheat	plastid	49.41	29.87
TraesCS5B01G563800.2	Wheat	plastid	49.7	29.84
TraesCS4A01G315700.3	Wheat	plastid	49.7	29.68
CDX85630	Canola	plastid	29.59	24.51
CDX91100	Canola	plastid	29.59	24.45
CDY09826	Canola	plastid	28.7	23.15
Zm00001d012810_P003	Maize	plastid	29.29	23.13
CDX93555	Canola	plastid	37.57	22.16
CDX97496	Canola	plastid	37.28	22.07
CDY31138	Canola	plastid	37.28	21.99
CDX95052	Canola	plastid	36.98	21.44
CDY52962	Canola	nucleus	27.81	19.58
CDY56127	Canola	nucleus	27.81	19.14
CDY19846	Canola	nucleus	27.22	18.85
CDX87140	Canola	plastid	27.22	18.29
CDX80416	Canola	nucleus	27.22	16.4
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	26.92	15.5
CDY13153	Canola	plastid	26.04	13.1
CDX76185	Canola	plastid	25.74	12.99
CDY54028	Canola	cytosol	0.3	1.22
CDY59157	Canola	cytosol	0.3	1.22
CDX73516	Canola	cytosol	0.3	1.22
CDX67575	Canola	cytosol	0.3	1.22

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:A0A078JL81	UniProt:A0A078JL81	EnsemblPlants:CDY66142
ProteinID:CDY66142	ProteinID:CDY66142.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	EnsemblPlantsGene:GSBRNA2T00052157001
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715
ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	UniParc:UPI0004EF23C6	InterPro:WH-like_DNA-bd_sf	:	:	:

Description

BnaAnng21640DBnaAnng21640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JL81]

Coordinates

chrLK035105:+:74..2210

Molecular Weight (calculated)

38664.8 Da

IEP (calculated)

10.047

GRAVY (calculated)

-0.566

Length

338 amino acids

Sequence
(BLAST)

001: NESSYIPQKV NAKKKMRQGF DNDDALQLFL WGPETKQLLT AKEEAELITH IQNLIKLEKV KTKLESQNGC EPTIAEWAEA LGISGPVLKS EIHRGRSSRE
101: KLITANLRLV VHIAKQYQNR GLNFQDLLQE GSMGLMKSVE KFKPQSGCRF ATYAYWWIRQ SIRKSIFQNS RTIRLPENVY MLLGKVSEAR KTCVQEGNYL
201: PSKEELAGHV GVSTEKLDKL LYNTRTPLSM QQPIWSDQDI TFQEVTPDSG IETPDMSVGK QMMRNHVRNL LNVLSPKERK IIKLRFGIDG GKQRSLSEIG
301: EIYGLSKERV RQLESRALYR LKQNMNSHGL NAYADLLV

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.