CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 3
endoplasmic reticulum 4
extracellular 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71154
CDX73773
CDX77962
CDX90677
CDY02832
CDY28989
CDY32688
CDY61025
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	CDX73773	AT3G50910.1	21798944
AT2G36990.1	CDX77962	AT3G50910.1	21798944
AT2G36990.1	CDX90677	AT3G50910.1	21798944
AT2G36990.1	CDY28989	AT3G50910.1	21798944
AT2G36990.1	CDY67893	AT3G50910.1	21798944
AT2G36990.1	CDX71154	AT5G58720.1	21798944
AT2G36990.1	CDY02832	AT5G58720.1	21798944
AT2G36990.1	CDY32688	AT5G58720.1	21798944
AT2G36990.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30300_001	Banana	nucleus	46.31	34.33
CDY66142	Canola	nucleus	77.18	34.02
CDY18468	Canola	plastid	81.21	22.24
AT2G36990.1	Thale cress	plastid	81.21	22.12
VIT_08s0040g01560.t01	Wine grape	plastid	61.07	16.22
Solyc09g008040.2.1	Tomato	nucleus, plastid	61.07	16.16
PGSC0003DMT400055506	Potato	nucleus, plastid	61.07	15.64
KRH67719	Soybean	nucleus	53.69	14.44
KRG96007	Soybean	nucleus	53.02	14.26
KRH19920	Soybean	plastid	53.02	13.76
KRH32532	Soybean	nucleus, plastid	53.02	13.74
GSMUA_Achr11P...	Banana	nucleus	48.99	12.61
KXG37075	Sorghum	plastid	42.28	11.35
Os08t0242800-01	Rice	plastid	42.28	11.01
Zm00001d012810_P003	Maize	plastid	31.54	10.98
HORVU5Hr1G125110.10	Barley	plastid	40.27	10.85
TraesCS5B01G563800.2	Wheat	plastid	40.94	10.83
TraesCS4A01G315700.3	Wheat	plastid	40.94	10.78
TraesCS5D01G551200.1	Wheat	plastid	40.27	10.73
CDX85630	Canola	plastid	27.52	10.05
CDX91100	Canola	plastid	26.85	9.78
CDY09826	Canola	plastid	26.85	9.55
CDX97496	Canola	plastid	29.53	7.71
CDY31138	Canola	plastid	29.53	7.68
CDX93555	Canola	plastid	28.86	7.5
CDX95052	Canola	plastid	28.86	7.38
CDY52962	Canola	nucleus	22.82	7.08
CDY56127	Canola	nucleus	22.82	6.92
CDX87140	Canola	plastid	22.82	6.76
CDY19846	Canola	nucleus	21.48	6.56
CDY13153	Canola	plastid	28.19	6.25
CDX76185	Canola	plastid	27.52	6.12
CDX80416	Canola	nucleus	22.82	6.06
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	22.15	5.62
CDY59157	Canola	cytosol	0.67	1.22
CDY54028	Canola	cytosol	0.67	1.22
CDX73516	Canola	cytosol	0.67	1.22
CDX67575	Canola	cytosol	0.67	1.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.6.2.1	GO:A0A078CX44	EnsemblPlants:CDX79708	ProteinID:CDX79708	ProteinID:CDX79708.1
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00132518001	InterPro:IPR036388	PFAM:PF04539
PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	TIGRFAMs:TIGR02937
TMHMM:TMhelix	UniParc:UPI0004EE472E	InterPro:WH-like_DNA-bd_sf	:	:	:

Description

BnaC03g20440D

Coordinates

chrLK031818:-:1812249..1813306

Molecular Weight (calculated)

17174.0 Da

IEP (calculated)

10.260

GRAVY (calculated)

-0.250

Length

149 amino acids

Sequence
(BLAST)

001: MYIIIFSYNL VVVSMSYPYL NFLKKLDKLM YNTRTPLSMQ QPIWSDQDTT FQEVTPDSGI ETPAMSVGKQ IMRNHVRNLF SVLSLSPKER RIIKLRFGIG
101: GGKQRSLSEI GEIYGLSKER VRQLESRALY KLKQNMNSHG LSAYADFLV

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.