CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98291
KRH08190
KRH28715
KRH30312
KRH69884
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36990.1	KRH08190	AT3G50910.1	21798944
AT2G36990.1	KRH28715	AT3G50910.1	21798944
AT2G36990.1	KRH69884	AT3G50910.1	21798944
AT2G36990.1	KRH76747	AT3G50910.1	21798944
AT2G36990.1	KRG98291	AT5G58720.1	21798944
AT2G36990.1	KRH30312	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32532	Soybean	nucleus, plastid	93.03	92.87
KRG96007	Soybean	nucleus	62.89	65.16
KRH67719	Soybean	nucleus	62.54	64.8
CDY66142	Canola	nucleus	35.89	60.95
GSMUA_Achr4P30300_001	Banana	nucleus	20.73	59.2
VIT_08s0040g01560.t01	Wine grape	plastid	56.45	57.75
AT2G36990.1	Thale cress	plastid	51.05	53.56
Bra017213.1-P	Field mustard	plastid	49.48	53.28
CDX79708	Canola	endoplasmic reticulum, extracellular	13.76	53.02
CDY18468	Canola	plastid	49.65	52.39
Solyc09g008040.2.1	Tomato	nucleus, plastid	50.7	51.69
PGSC0003DMT400055506	Potato	nucleus, plastid	50.52	49.83
GSMUA_Achr11P...	Banana	nucleus	44.6	44.21
Os08t0242800-01	Rice	plastid	37.28	37.41
KXG37075	Sorghum	plastid	35.71	36.94
TraesCS5D01G551200.1	Wheat	plastid	35.71	36.67
TraesCS5B01G563800.2	Wheat	plastid	35.89	36.59
HORVU5Hr1G125110.10	Barley	plastid	35.19	36.53
TraesCS4A01G315700.3	Wheat	plastid	35.54	36.04
Zm00001d012810_P003	Maize	plastid	24.91	33.41
KRH51354	Soybean	nucleus	26.31	30.2
KRH60664	Soybean	nucleus	27.35	27.84
KRH23963	Soybean	plastid	20.21	23.06
KRH39837	Soybean	plastid	20.03	22.86
KRH04862	Soybean	mitochondrion	21.25	22.14
KRH53442	Soybean	plastid	18.82	21.3
KRH64502	Soybean	plastid	18.64	20.62
KRH18145	Soybean	mitochondrion, nucleus	17.6	19.73
KRH16520	Soybean	mitochondrion, nucleus	17.42	19.53
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	12.72	17.68

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100306289	MapMan:15.6.2.1	EMBL:ACUP02008216	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G144000	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142
UniProt:I1LZ84	InterPro:IPR036388	EnsemblPlants:KRH19920	ProteinID:KRH19920	ProteinID:KRH19920.1	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00715	ScanProsite:PS00716
PANTHER:PTHR30603	PANTHER:PTHR30603:SF9	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	UniParc:UPI000233AF4B	InterPro:WH-like_DNA-bd_sf	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:25666421..25671857

Molecular Weight (calculated)

65576.9 Da

IEP (calculated)

9.905

GRAVY (calculated)

-0.513

Length

574 amino acids

Sequence
(BLAST)

001: MEFSRTMFCS SPPFPPRTHH PWNTLPLSSS TSVLMLREQA SPTVASWSSN FSAQNFPASV LLQEQRDEYR PLLHMSKEDK TSQAMLSTRQ MDTVMVHEEN
101: NTENADQVVL DFRKHLHYWP HLQNLLASSQ TGEISASSTL QQVSSDLDRH TNGVQCNRVS LAKKALSTSK QGSSVVEDLK SIKADDDSIP FGLASTGLAD
201: PSIGRNKTVR STRLLERRSK QRKVPKSKVI DDETYLARKD DAHEKLRVEK KKNEELDQND PLCFFLRGPE TKQLLTLEQE SQLISQIQDL LRLEEVKTKL
301: QSQFGREPTM AEWAEGVGLN CRMLHAQLRS GSRSREKLIQ ANLRMVVHVA KSYQGRGLSL QDLLQEGSMG LMKSVEKFNP LVGSRFGNYA FWWIRQAIRK
401: AVFRHSRTIR LPEKVFILLG KVMEAKKLYI QEGNLHPTKE ELARRVGVTV EKIDKLLFSA RIPISMQQTV WADQNTTFQE ITADPTVEAT DVSVEKQLMR
501: QHVLNVLSIL HPKERRIIRL RYGFEDGEQK SLSEIGDIFG LSKERVRQLE IRALYKLKKC LVKQGLDAYV DLLL

Best Arabidopsis Sequence Match ( AT2G36990.1 )
(BLAST)

001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV

Arabidopsis Description

SIGFRNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.