CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53442	Soybean	plastid	92.29	94.48
KRH18145	Soybean	mitochondrion, nucleus	71.87	72.85
KRH16520	Soybean	mitochondrion, nucleus	70.71	71.68
VIT_16s0050g02520.t01	Wine grape	plastid	66.67	66.8
PGSC0003DMT400023432	Potato	plastid	64.74	65.12
CDX87140	Canola	plastid	62.62	64.61
Solyc03g007370.2.1	Tomato	plastid	63.97	64.47
CDY19846	Canola	nucleus	59.15	62.91
AT5G24120.3	Thale cress	nucleus	62.62	62.86
Bra026466.1-P	Field mustard	nucleus	58.77	62.76
GSMUA_Achr7P24590_001	Banana	plastid	59.15	60.79
Bra009735.1-P	Field mustard	plastid	59.54	60.59
CDX80416	Canola	nucleus	59.54	55.08
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	59.34	52.47
EES18781	Sorghum	plastid	47.4	49.1
Zm00001d039194_P001	Maize	plastid	46.05	48.09
TraesCS1A01G426700.1	Wheat	plastid	45.66	47.98
TraesCS1D01G436500.1	Wheat	plastid	45.28	47.57
TraesCS1B01G461600.1	Wheat	plastid	45.09	47.56
Os05t0586600-01	Rice	plastid	28.32	41.41
KRH51354	Soybean	nucleus	20.81	21.6
KRH67719	Soybean	nucleus	21.97	20.58
KRG96007	Soybean	nucleus	21.58	20.22
KRH39837	Soybean	plastid	19.08	19.68
KRH60664	Soybean	nucleus	21.39	19.68
KRH23963	Soybean	plastid	18.69	19.28
KRH32532	Soybean	nucleus, plastid	20.81	18.78
KRH19920	Soybean	plastid	20.62	18.64
KRH04862	Soybean	mitochondrion	18.69	17.6
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	12.72	15.98

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	UniProt:A0A0R0KC17	EMBL:ACUP02002767	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G238200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	EnsemblPlants:KRH64502
ProteinID:KRH64502	ProteinID:KRH64502.1	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046
PANTHER:PTHR30603	PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
UniParc:UPI0006ED7E18	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:50676686..50679525

Molecular Weight (calculated)

59390.2 Da

IEP (calculated)

10.726

GRAVY (calculated)

-0.545

Length

519 amino acids

Sequence
(BLAST)

001: MGVVTVSGSA SRTPLGFNTK FSTHRLKRPL IVAFKGDKHN DSALVATQEK IPVPVETAKK TQKKRIGKSN KLPKRESSPS SMDVDYNEAA AMLENIYKLS
101: PASHTGNAEC IDDKIKRVSR RGKKVVDESE EKELKGDRVV RRQNKNKKAK RLTLDQRISL KNNKRGDEVI PTRKKRNFRN RIEKIEELIR EYSVSNDFIS
201: MDWKRMRIPP VLSSSEHAWL FKLMQPMKLS IKLLSIFLAL LQVKEDLQKE LAREPADGEL ADATNMSITQ VKKAIDVGQA ARNKLIKHNL RLVLFVINKY
301: FTDFASGPRF QDLCQAGVKG LITAIDRFEP NRRFRLSTYS LFWIRHAIIR SMTLSSFIRV PFGLESVRAE IQKAKTELTF KLQRSPTEEE IIERVHISPE
401: RYHDIIKASK SILSLNSRHT TTQEEFINGI VDDDGVNGDN RKQPALLRLA LDDVLDSLKP KESLVIRQRF GLDGKGDRTL GEIAGNLNIS REMVRKHEVK
501: ALMKLNHSAR LDYLRRYVV

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.