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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 4
  • mitochondrion 1
  • nucleus 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX87140 Canola plastid 85.88 88.27
CDY19846 Canola nucleus 81.82 86.68
Bra026466.1-P Field mustard nucleus 80.85 86.01
Bra009735.1-P Field mustard plastid 83.75 84.9
CDX80416 Canola nucleus 83.95 77.36
CDX88078 Canola cytosol, mitochondrion, nucleus, vacuole 83.56 73.59
KRH53442 Soybean plastid 63.64 64.89
VIT_16s0050g02520.t01 Wine grape plastid 64.02 63.9
KRH64502 Soybean plastid 62.86 62.62
PGSC0003DMT400023432 Potato plastid 61.51 61.63
KRH18145 Soybean mitochondrion, nucleus 60.35 60.94
Solyc03g007370.2.1 Tomato plastid 60.54 60.78
KRH16520 Soybean mitochondrion, nucleus 60.15 60.74
GSMUA_Achr7P24590_001 Banana plastid 57.25 58.61
EES18781 Sorghum plastid 46.62 48.1
Zm00001d039194_P001 Maize plastid 45.84 47.69
TraesCS1A01G426700.1 Wheat plastid 45.45 47.57
TraesCS1D01G436500.1 Wheat plastid 45.45 47.57
TraesCS1B01G461600.1 Wheat plastid 44.87 47.15
Os05t0586600-01 Rice plastid 28.63 41.69
AT1G64860.1 Thale cress nucleus 20.5 21.12
AT2G36990.1 Thale cress plastid 21.47 20.29
AT5G13730.1 Thale cress plastid 16.44 20.29
AT1G08540.1 Thale cress plastid 21.86 19.76
AT3G53920.1 Thale cress plastid 17.21 15.59
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.10.601.10MapMan:15.6.2.1EntrezGene:832477UniProt:A0A178URC9ProteinID:AED93259.1
EMBL:AK221445EMBL:AK316888ProteinID:ANM68680.1ProteinID:ANM68681.1ArrayExpress:AT5G24120EnsemblPlantsGene:AT5G24120
RefSeq:AT5G24120TAIR:AT5G24120RefSeq:AT5G24120-TAIR-GEnsemblPlants:AT5G24120.3EMBL:AY045660Unigene:At.5425
ProteinID:BAA78109.1ProteinID:BAB11572.1ncoils:CoilGO:GO:0001053GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006091GO:GO:0006139GO:GO:0006351
GO:GO:0006352GO:GO:0006355GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009553GO:GO:0009628GO:GO:0009658
GO:GO:0009987GO:GO:0010114GO:GO:0010207GO:GO:0010218GO:GO:0015979GO:GO:0016043
GO:GO:0016987GO:GO:0045893GO:GO:0071472GO:GO:0071483GO:GO:2000142GO:GO:2001141
InterPro:IPR036388RefSeq:NP_001330408.1RefSeq:NP_001330409.1RefSeq:NP_197800.1ProteinID:OAO95674.1PFAM:PF04539
PFAM:PF04542PFAM:PF04545PRINTS:PR00046PANTHER:PTHR30603PANTHER:PTHR30603:SF4UniProt:Q9ZNX9
InterPro:RNA_pol_sigma-70_domInterPro:RNA_pol_sigma70InterPro:RNA_pol_sigma70_r2InterPro:RNA_pol_sigma70_r3InterPro:RNA_pol_sigma70_r4InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-likeSymbol:SIGESUPFAM:SSF88659SUPFAM:SSF88946TIGRFAMs:TIGR02937UniParc:UPI00000A6321
InterPro:WH-like_DNA-bd_sfEMBL:Y18550SEG:seg:::
Description
SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
Coordinates
chr5:-:8157477..8160163
Molecular Weight (calculated)
58816.6 Da
IEP (calculated)
10.589
GRAVY (calculated)
-0.560
Length
517 amino acids
Sequence
(BLAST)
001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.