Factsheet for AT5G13730.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09826	Canola	plastid	87.35	87.35
CDX91100	Canola	plastid	84.73	86.8
CDX85630	Canola	plastid	84.49	86.76
Bra008807.1-P	Field mustard	plastid	84.01	86.7
VIT_13s0064g00190.t01	Wine grape	nucleus	44.63	58.62
PGSC0003DMT400017455	Potato	nucleus	34.84	53.28
Bra023430.1-P	Field mustard	plastid	80.43	46.35
Solyc01g087690.1.1	Tomato	nucleus	42.72	42.52
GSMUA_Achr4P18530_001	Banana	plastid	39.38	35.26
AT1G64860.1	Thale cress	nucleus	25.78	21.51
AT2G36990.1	Thale cress	plastid	26.73	20.48
AT1G08540.1	Thale cress	plastid	27.92	20.45
AT3G53920.1	Thale cress	plastid	23.87	17.51
AT5G24120.3	Thale cress	nucleus	20.29	16.44

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	EntrezGene:831218	ProteinID:AED91933.1	EMBL:AF101075
ArrayExpress:AT5G13730	EnsemblPlantsGene:AT5G13730	RefSeq:AT5G13730	TAIR:AT5G13730	RefSeq:AT5G13730-TAIR-G	EnsemblPlants:AT5G13730.1
TAIR:AT5G13730.1	EMBL:AY059907	EMBL:AY114689	Unigene:At.49018	ProteinID:BAA78110.1	ProteinID:BAA78111.1
ProteinID:BAB08700.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:0071482	GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	RefSeq:NP_196877.1	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF24	UniProt:Q9ZSL6
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	Symbol:SIG4	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
UniParc:UPI000009DAF0	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

SIGDRNA polymerase sigma factor sigD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSL6]

Coordinates

chr5:-:4429095..4430901

Molecular Weight (calculated)

47168.1 Da

IEP (calculated)

10.147

GRAVY (calculated)

-0.469

Length

419 amino acids

Sequence
(BLAST)

001: MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN
101: AGVEAEAETI SVPVVGASRS GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL
301: AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK
401: KLRNVHNVND LKIYYSSSE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.