Factsheet for GSMUA_Achr4P18530_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g00190.t01	Wine grape	nucleus	36.54	53.6
PGSC0003DMT400017455	Potato	nucleus	29.06	49.63
CDX85630	Canola	plastid	35.68	40.93
Bra008807.1-P	Field mustard	plastid	35.47	40.89
CDX91100	Canola	plastid	35.68	40.83
Solyc01g087690.1.1	Tomato	nucleus	36.32	40.38
CDY09826	Canola	plastid	35.47	39.62
AT5G13730.1	Thale cress	plastid	35.26	39.38
GSMUA_Achr4P30300_001	Banana	nucleus	12.18	28.36
GSMUA_Achr1P10700_001	Banana	nucleus	20.73	22.93
Bra023430.1-P	Field mustard	plastid	34.83	22.42
GSMUA_Achr7P04860_001	Banana	nucleus	25.43	21.72
GSMUA_Achr11P...	Banana	nucleus	20.94	21.35
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	25.0	21.35
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	23.72	19.47
GSMUA_Achr11P...	Banana	nucleus	22.01	17.79
GSMUA_Achr7P24590_001	Banana	plastid	16.45	15.25

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043
GO:GO:0016987	GO:GO:0071482	GO:GO:2000142	GO:GO:2001141	EnsemblPlantsGene:GSMUA_Achr4G18530_001	EnsemblPlants:GSMUA_Achr4P18530_001
EnsemblPlants:GSMUA_Achr4T18530_001	InterPro:IPR036388	UniProt:M0SQ16	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
PRINTS:PR00046	ScanProsite:PS00715	ScanProsite:PS00716	PANTHER:PTHR30603	PANTHER:PTHR30603:SF24	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0002966C0C	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G18530_001]

Coordinates

chr4:-:19431840..19442569

Molecular Weight (calculated)

52701.2 Da

IEP (calculated)

10.073

GRAVY (calculated)

-0.548

Length

468 amino acids

Sequence
(BLAST)

001: MIMCACSVNT SSGAPTTLSL PTHRVMLSKA SSSSAQASQP TTVISSPPSN YCSSHGSRVI SRTPTTITAM KDAVDLSRAA AQVAKEAVSS ATAFEEITPV
101: QSGRELLLLL RRKEEDSDER RCGDNAMTER RRRRRRKRSK AAGLSGVDDD SEEDGIASRF LLGKTCSSRS ERSKYLTSRQ EAEFSRYLKE EAMMDAEAQL
201: LRGCSSLDSE NVAQYGRMKR RSEKAFLRAR ESRERITLSY KRLVVSIAAT YQGKGLTIQD LIQEGCIGLL RGAQRFDHMK GYKLSTYVYW WIKQGIVRAI
301: ANKSRLIRLP GNLCEAMNKV AEANSSLRRR LGRSPTYKEV ADLIDMDVSN VRLVSERSRP PISIDQVGKE GLRLMDIIPA QDDRRPETVV DRQLLLQNLE
401: KALKTLSDRE EYIVRLHYGL NGETVRSCDE IGRLMNLSRE RVRQIHCGAL KRLREDKSFV EYLHHNVA

Best Arabidopsis Sequence Match ( AT5G13730.1 )
(BLAST)

001: MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN
101: AGVEAEAETI SVPVVGASRS GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL
301: AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK
401: KLRNVHNVND LKIYYSSSE

Arabidopsis Description

SIGDRNA polymerase sigma factor sigD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSL6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.