Factsheet for GSMUA_Achr1P10700_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	81.56	75.16
HORVU7Hr1G069520.2	Barley	nucleus	45.63	64.33
Os08t0163400-01	Rice	nucleus	57.68	58.51
CDY52962	Canola	nucleus	63.36	55.83
KRH23963	Soybean	plastid	65.72	55.27
KRH39837	Soybean	plastid	65.25	54.87
CDY56127	Canola	nucleus	63.36	54.58
Bra008513.1-P	Field mustard	nucleus	63.12	54.27
AT1G64860.1	Thale cress	nucleus	63.83	53.78
Solyc03g097320.2.1	Tomato	nucleus, plastid	64.54	53.63
Solyc06g072710.2.1	Tomato	nucleus	62.88	52.67
PGSC0003DMT400069555	Potato	nucleus	62.88	52.67
EES13412	Sorghum	plastid	59.81	50.6
TraesCS7A01G297900.2	Wheat	plastid	60.76	50.39
TraesCS7D01G292000.1	Wheat	plastid	60.76	50.29
Zm00001d049494_P001	Maize	plastid	59.81	50.2
TraesCS7B01G184800.1	Wheat	nucleus, plastid	59.81	49.51
Zm00001d024507_P001	Maize	plastid	51.54	48.44
VIT_16s0039g00660.t01	Wine grape	plastid	65.48	47.92
PGSC0003DMT400068109	Potato	nucleus	58.16	40.33
GSMUA_Achr4P30300_001	Banana	nucleus	14.42	30.35
GSMUA_Achr7P17330_001	Banana	nucleus, plastid	27.9	21.53
GSMUA_Achr7P04860_001	Banana	nucleus	27.42	21.17
GSMUA_Achr4P18530_001	Banana	plastid	22.93	20.73
GSMUA_Achr7P24590_001	Banana	plastid	22.7	19.01
GSMUA_Achr11P...	Banana	nucleus	26.0	19.0
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	20.09	14.91

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:2000142	EnsemblPlantsGene:GSMUA_Achr1G10700_001	EnsemblPlants:GSMUA_Achr1P10700_001	EnsemblPlants:GSMUA_Achr1T10700_001	InterPro:IPR036388	UniProt:M0RYS9
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603
PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000294E584
InterPro:WH-like_DNA-bd_sf	:	:	:	:	:

Description

Putative RNA polymerase sigma factor rpoD3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G10700_001]

Coordinates

chr1:-:8084082..8090185

Molecular Weight (calculated)

48223.5 Da

IEP (calculated)

10.513

GRAVY (calculated)

-0.425

Length

423 amino acids

Sequence
(BLAST)

001: MMATAAVIGL HTGKRLLSSS FCQTDLTEKL FSSMLEKQWE LPFTQMTTVV APENSCQMPE ITRSGISARE RRTISSRKCF SHKANLVPSS RVKQLHPSVS
101: RELLKSDISG YVRGTVSENL LTHAEVANLS KTIKAGIHIQ EQRAKLQDKL GFEPTDRQLA SSLRMSRAEL HTKMIESSLA REKLAMSNVR LVMSIAQKYD
201: NLGAEMTDLI QAGLIGLLRG IEKFDSSKGF RISTYVYWWI RQGVSRALFK NSRTLRLPTH LHERLSSIRH AKIRLEEKGI TPSIDKLAET LNMSQKKIRD
301: ATQAASKVLS LDREAFPSLN GLPGETLHSY IADRNVENNP WYGFEEWSLK DEVKKLLYTT LSKREREIIR LYHGIDSECH TWEDIGKRFG LSRERVRQVG
401: LIAMEKLKHV ARRRKLEAVL VKH

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.