Factsheet for Os08t0163400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G069520.2	Barley	nucleus	60.67	84.33
EES13412	Sorghum	plastid	84.17	70.2
Zm00001d049494_P001	Maize	plastid	83.69	69.25
TraesCS7D01G292000.1	Wheat	plastid	83.21	67.91
TraesCS7A01G297900.2	Wheat	plastid	82.49	67.45
TraesCS7B01G184800.1	Wheat	nucleus, plastid	82.49	67.32
Zm00001d024507_P001	Maize	plastid	71.7	66.44
GSMUA_Achr1P10700_001	Banana	nucleus	58.51	57.68
GSMUA_Achr11P...	Banana	nucleus	58.27	52.94
KRH23963	Soybean	plastid	59.47	49.3
KRH39837	Soybean	plastid	58.51	48.51
CDY52962	Canola	nucleus	55.4	48.12
PGSC0003DMT400069555	Potato	nucleus	58.03	47.92
Solyc06g072710.2.1	Tomato	nucleus	57.79	47.72
CDY56127	Canola	nucleus	55.64	47.25
Bra008513.1-P	Field mustard	nucleus	55.4	46.95
AT1G64860.1	Thale cress	nucleus	55.88	46.41
Solyc03g097320.2.1	Tomato	nucleus, plastid	55.88	45.78
VIT_16s0039g00660.t01	Wine grape	plastid	57.79	41.7
PGSC0003DMT400068109	Potato	nucleus	51.56	35.25
Os11t0448400-02	Rice	nucleus	26.62	26.24
Os03t0271100-01	Rice	mitochondrion	28.06	21.67
Os05t0586600-01	Rice	plastid	17.03	20.0
Os08t0242800-01	Rice	plastid	26.38	19.23
Os05t0589200-01	Rice	plasma membrane	17.51	15.73

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	UniProt:A0A0P0XCX8	ProteinID:BAT03964.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987
GO:GO:0016043	GO:GO:2000142	InterPro:IPR036388	EnsemblPlantsGene:Os08g0163400	EnsemblPlants:Os08t0163400-01	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF14
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0000DD93D0	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

SIGMA FACTOR ARNA polymerase sigma-70 domain containing protein. (Os08t0163400-01);Similar to Plastid RNA polymerase sigma factor. (Os08t0163400-02)

Coordinates

chr8:+:3732442..3736138

Molecular Weight (calculated)

47511.9 Da

IEP (calculated)

9.609

GRAVY (calculated)

-0.501

Length

417 amino acids

Sequence
(BLAST)

001: CPTPSPASRA AHAHDLESSL EAIVLLQRSM LEKQWELPFD DDNHAMAIGL AEDDDDTSKA TVVVARSSVS ARQRRMSGRR RGRTKNGAAH FAVSPELIQS
101: RNRIYLRGTV SKELLTHKQV VHLSHKIKDG IWLQQQRSKL KEKLGNEPSY KQLAHSLKIS PPELRSRMHE SFLAREMLTM SNLRLVISIA QKYDNLGVEL
201: ADLIQGGLIG LLRGIEKFDA SRGFRISTYV YWWIRQGVSR ALAENSKTFR LPTYLHERLI AIRGAKYELE DQGIAPTIEN IAGSLNISEK KVLNATEAVN
301: KVLSLDQQAF PSLNGLPGET LHSYIEDQNV ANDPWHGFEE WYLKEEVNKL LNSTLNERER DIIRLYHGIG KQCHTWEDIS RQFGLSRERV RQVGLIAMEK
401: LKHAARRKNL EALLEDY

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.