Factsheet for Zm00001d049494_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13412	Sorghum	plastid	90.67	91.4
Zm00001d024507_P001	Maize	plastid	80.56	90.22
HORVU7Hr1G069520.2	Barley	nucleus	51.39	86.33
Os08t0163400-01	Rice	nucleus	69.25	83.69
TraesCS7D01G292000.1	Wheat	plastid	77.78	76.71
TraesCS7B01G184800.1	Wheat	nucleus, plastid	77.18	76.13
TraesCS7A01G297900.2	Wheat	plastid	76.98	76.08
GSMUA_Achr1P10700_001	Banana	nucleus	50.2	59.81
GSMUA_Achr11P...	Banana	nucleus	51.79	56.86
KRH23963	Soybean	plastid	54.17	54.27
KRH39837	Soybean	plastid	52.98	53.08
PGSC0003DMT400069555	Potato	nucleus	52.58	52.48
Solyc06g072710.2.1	Tomato	nucleus	52.38	52.28
CDY52962	Canola	nucleus	49.6	52.08
Solyc03g097320.2.1	Tomato	nucleus, plastid	51.98	51.47
AT1G64860.1	Thale cress	nucleus	51.19	51.39
CDY56127	Canola	nucleus	50.0	51.32
Bra008513.1-P	Field mustard	nucleus	50.0	51.22
VIT_16s0039g00660.t01	Wine grape	plastid	51.79	45.16
PGSC0003DMT400068109	Potato	nucleus	45.63	37.7
Zm00001d049160_P002	Maize	plastid	23.21	21.16
Zm00001d028585_P001	Maize	plastid	21.83	20.83
Zm00001d039194_P001	Maize	plastid	20.04	20.32
Zm00001d012810_P003	Maize	plastid	15.28	17.99
Zm00001d039181_P001	Maize	nucleus	19.44	17.35

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	EntrezGene:541692	ProteinID:AQK50661.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388	UniProt:K7UB44	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000221CE9D	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d049494
EnsemblPlants:Zm00001d049494_P001	EnsemblPlants:Zm00001d049494_T001	SEG:seg	:	:	:

Description

sigma factor 1Bsigma factor 1B

Coordinates

chr4:-:32383217..32386961

Molecular Weight (calculated)

56106.0 Da

IEP (calculated)

10.057

GRAVY (calculated)

-0.428

Length

504 amino acids

Sequence
(BLAST)

001: MTATPAVIGL SAGHRLLATS FGSPDLASPD AHSSLQFAAA APKLTVVAHR APASSSSSSP PNVGRGSSAA GHARARAIRA LRNHSAPALA TPPPPPLPAD
101: PTPDLDSEFE SSLEAIVLLQ RSMLEKQWEL PFEDDIISTD DEQDDRVSKA TVVAARSGVS ARQRRMSGRR RGAGRKSVAI SPELMQSRNR IYLRGTVSKD
201: LLTHKQVIQL SRKIKDGIWL QHQRSKLKEK LGNEPSYKQL AQSLRISAPE LRARMRESFL AREMLTMSNI RLVISIAHKY DNLGVDLADL IQGGLIGLLR
301: GIEKFDASRG FRISTYVYWW IRQGVSRALA DNSKTFRLPT YLHERLIAIR GAKYALEDQG IAPTIENIAE SLNISEKKVH NATEAVNKVL SLDQQAFPSL
401: NGLPGDTLHS YIEDQNVAND PWHGFEEMYL KEEVNNLINS NLNERERDII RLYHGIGKQC HTWEDISRQF GLSRERVRQV GLVAMEKLKH AARRKHLDAL
501: LEDY

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.