Factsheet for Zm00001d039181_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18778	Sorghum	plastid	80.53	77.12
Os05t0589200-01	Rice	plasma membrane	50.09	60.99
TraesCS1A01G431600.2	Wheat	plastid	61.24	60.7
TraesCS1D01G440900.1	Wheat	plastid	61.95	60.55
TraesCS1B01G467100.1	Wheat	plastid	60.88	60.46
PGSC0003DMT400010456	Potato	nucleus	5.13	42.03
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	38.41	38.07
VIT_04s0008g00600.t01	Wine grape	plastid	31.68	31.91
KRH04862	Soybean	mitochondrion	29.56	30.31
Bra014857.1-P	Field mustard	nucleus, plastid	29.03	29.98
PGSC0003DMT400065483	Potato	mitochondrion	28.32	28.83
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	21.06	28.81
Solyc08g065970.2.1	Tomato	nucleus	27.96	28.68
AT3G53920.1	Thale cress	plastid	28.32	28.02
Zm00001d049160_P002	Maize	plastid	24.6	25.14
CDX76185	Canola	plastid	28.67	24.18
CDY13153	Canola	plastid	28.67	24.11
Zm00001d028585_P001	Maize	plastid	22.12	23.67
Zm00001d039194_P001	Maize	plastid	17.7	20.12
Zm00001d024507_P001	Maize	plastid	15.58	19.56
Zm00001d049494_P001	Maize	plastid	17.35	19.44
Zm00001d012810_P003	Maize	plastid	12.04	15.89

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	EntrezGene:542081	ProteinID:AQK88987.1	EMBL:BT066152
UniProt:C0PCY3	ncoils:Coil	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:2000142	InterPro:IPR036388	EMBL:KJ727653	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
PIRSF:PIRSF000767	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000194B4BC	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d039181
EnsemblPlants:Zm00001d039181_P001	EnsemblPlants:Zm00001d039181_T001	SEG:seg	:	:	:

Description

Sigma70-like-transcription factor 7RNA polymerase sigma factor sigC

Coordinates

chr6:-:172035940..172039648

Molecular Weight (calculated)

63106.5 Da

IEP (calculated)

9.121

GRAVY (calculated)

-0.477

Length

565 amino acids

Sequence
(BLAST)

001: MLACRCCCYR LGGDYSVLCS NDARNDDGTP RQCAWLITMN GGRAISSESL AALAWHFLLR RRSRDGATAL ASSSGVLQIA EDKSSAANLT KHKVSAERKL
101: LNDALDRTGV RYETESWMDE ETSSWMDRDL TDSDLRYRLL MQNLEELETS LVGKDLEMDI LEQLGALGSF NASVARGVSA LHGRPDGSLL DDPEPETTPL
201: DAGQEDSQVV VVRSGKSQER KLRRMRASSD EKGSRTSVKV NPPRRPKKSR KASSSQFISE WKSHPGQRRI IVREQSALLS TIKECAGLEK IREKMVKEGQ
301: EVSYHRWAEA AGVDEAELVS RLQAGYCCRD RLLVTTEWLV RCIARTYTGM GTALDDLLQA GKMGVLDGAE KFDSRKGCRF STYVKYWIRK GMLALLAENS
401: GVTLLPARME SIMRKVKEAR RGIRYRQGRN PSDSEVAAAV GVSVANVRLA RKCSRRAVSL YSEVAIGQDV KFAEVIPDES ASPDEAALFR GQLRERLLLV
501: LGRLPAREGR VLRLRHGLED GRCRSLEEIG GIYGVSKEWI RKIEKSAMAR LRDDDAVRRD LHDFV

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.