Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G467100.1 | Wheat | plastid | 91.75 | 91.92 |
| TraesCS1D01G440900.1 | Wheat | plastid | 92.81 | 91.52 |
| Os05t0589200-01 | Rice | plasma membrane | 59.12 | 72.63 |
| EES18778 | Sorghum | plastid | 65.26 | 63.05 |
| Zm00001d039181_P001 | Maize | nucleus | 60.7 | 61.24 |
| PGSC0003DMT400010456 | Potato | nucleus | 5.09 | 42.03 |
| GSMUA_Achr4P01060_001 | Banana | golgi, mitochondrion, nucleus, plastid | 39.47 | 39.47 |
| VIT_04s0008g00600.t01 | Wine grape | plastid | 34.04 | 34.58 |
| KRH04862 | Soybean | mitochondrion | 30.35 | 31.4 |
| Solyc08g065970.2.1 | Tomato | nucleus | 30.0 | 31.03 |
| PGSC0003DMT400065483 | Potato | mitochondrion | 30.0 | 30.81 |
| Bra014857.1-P | Field mustard | nucleus, plastid | 29.47 | 30.71 |
| KRH16276 | Soybean | golgi, mitochondrion, nucleus, plastid | 21.58 | 29.78 |
| AT3G53920.1 | Thale cress | plastid | 29.3 | 29.25 |
| CDX76185 | Canola | plastid | 29.3 | 24.93 |
| CDY13153 | Canola | plastid | 29.12 | 24.7 |
| TraesCS4A01G157100.1 | Wheat | plastid | 23.86 | 24.68 |
| TraesCS4A01G095200.1 | Wheat | plastid | 22.98 | 23.91 |
| TraesCS1A01G426700.1 | Wheat | plastid | 17.54 | 20.24 |
| TraesCS7A01G297900.2 | Wheat | plastid | 17.02 | 19.02 |
| TraesCS4A01G315700.3 | Wheat | plastid | 18.77 | 18.9 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.601.10 | MapMan:15.6.2.1 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006352 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR036388 | PFAM:PF04539 | PFAM:PF04542 | PFAM:PF04545 | PIRSF:PIRSF000767 | PRINTS:PR00046 |
| PANTHER:PTHR30603 | PANTHER:PTHR30603:SF13 | InterPro:RNA_pol_sigma-70_dom | InterPro:RNA_pol_sigma70 | InterPro:RNA_pol_sigma70_r2 | InterPro:RNA_pol_sigma70_r3 |
| InterPro:RNA_pol_sigma70_r4 | InterPro:RNA_pol_sigma_SigB/C/D/F | InterPro:RNA_pol_sigma_r2 | InterPro:RNA_pol_sigma_r3/r4-like | SUPFAM:SSF88659 | SUPFAM:SSF88946 |
| TIGRFAMs:TIGR02937 | EnsemblPlantsGene:TraesCS1A01G431600 | EnsemblPlants:TraesCS1A01G431600.2 | InterPro:WH-like_DNA-bd_sf | TIGR:cd06171 | SEG:seg |
Description
No Description!
Coordinates
chr1A:+:583892469..583895020
Molecular Weight (calculated)
63971.2 Da
IEP (calculated)
9.800
GRAVY (calculated)
-0.382
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLPMARGPC CCSPSSSSSS SSPWMLQAQL PKNPHPPLSG RSVCSESLRV LALHLLLNRR ANLSRRWGDI TRTAASSSGL LQITGNMSGC SPKIKVDAER
101: TSLDGALDRN AQFDMIYEDM SSWMNGAHTS GNSLQYNLLM QNIHVLQSSL AAQDLVLLER DILVHIEQLG ALKWFNASRS GATITHTSHA PDFALPWNDT
201: EFAPVTPLDE QSDDQLVIIR SGKSQERKLK RIRASEKVSV VCVKASSQKP RKSRRSTSSQ FISEWKNYPG RRRSIVREQS DLLVTIKECA NLEKIRENMV
301: KEGQEVCYDK WAKAAGVDEA VLKSRLQAGY CCRERLLVTT EWLVKYIART YTGMGTAFED LLQAGKMGVL DGAERFDSQR GCKFSTYVKY WIRKPMLALL
401: AENSGVIQLP ARMDCIIRKV REAKRAIRSS TGRNPIDAEI ATFVGASVAN VRLARKCSRR VVSLYMEVGA GQNAKFMDVT PDTSLEDPEE AIFRRQLRER
501: LLMVLDRLPA REGRVLKLRH GLEDGRCRSL EQIGGIYHVS KEWIRKIEKS AMSKLRNEDV HGELKDFCGF
101: TSLDGALDRN AQFDMIYEDM SSWMNGAHTS GNSLQYNLLM QNIHVLQSSL AAQDLVLLER DILVHIEQLG ALKWFNASRS GATITHTSHA PDFALPWNDT
201: EFAPVTPLDE QSDDQLVIIR SGKSQERKLK RIRASEKVSV VCVKASSQKP RKSRRSTSSQ FISEWKNYPG RRRSIVREQS DLLVTIKECA NLEKIRENMV
301: KEGQEVCYDK WAKAAGVDEA VLKSRLQAGY CCRERLLVTT EWLVKYIART YTGMGTAFED LLQAGKMGVL DGAERFDSQR GCKFSTYVKY WIRKPMLALL
401: AENSGVIQLP ARMDCIIRKV REAKRAIRSS TGRNPIDAEI ATFVGASVAN VRLARKCSRR VVSLYMEVGA GQNAKFMDVT PDTSLEDPEE AIFRRQLRER
501: LLMVLDRLPA REGRVLKLRH GLEDGRCRSL EQIGGIYHVS KEWIRKIEKS AMSKLRNEDV HGELKDFCGF
001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q
Arabidopsis Description
SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.