CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	58.62	78.21
VIT_04s0008g00600.t01	Wine grape	plastid	51.91	50.98
AT3G53920.1	Thale cress	plastid	44.65	43.08
PGSC0003DMT400065483	Potato	mitochondrion	43.38	43.06
Solyc08g065970.2.1	Tomato	nucleus	43.01	43.01
Bra014857.1-P	Field mustard	nucleus, plastid	42.65	42.96
PGSC0003DMT400010456	Potato	nucleus	5.26	42.03
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	39.02	37.72
CDX76185	Canola	plastid	43.74	35.97
CDY13153	Canola	plastid	43.01	35.27
TraesCS1D01G440900.1	Wheat	plastid	31.94	30.45
TraesCS1A01G431600.2	Wheat	plastid	31.4	30.35
TraesCS1B01G467100.1	Wheat	plastid	30.67	29.7
Zm00001d039181_P001	Maize	nucleus	30.31	29.56
Os05t0589200-01	Rice	plasma membrane	24.68	29.31
KRH51354	Soybean	nucleus	25.41	28.0
EES18778	Sorghum	plastid	29.58	27.63
KRH60664	Soybean	nucleus	25.95	25.35
KRH32532	Soybean	nucleus, plastid	22.69	21.74
KRG96007	Soybean	nucleus	21.6	21.48
KRH19920	Soybean	plastid	22.14	21.25
KRH67719	Soybean	nucleus	21.05	20.94
KRH18145	Soybean	mitochondrion, nucleus	19.06	20.51
KRH16520	Soybean	mitochondrion, nucleus	19.06	20.51
KRH39837	Soybean	plastid	18.33	20.08
KRH23963	Soybean	plastid	18.33	20.08
KRH53442	Soybean	plastid	17.6	19.13
KRH64502	Soybean	plastid	17.6	18.69

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100802522	MapMan:15.6.2.1	EMBL:ACUP02010587	ncoils:Coil
EnsemblPlantsGene:GLYMA_17G192200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	UniProt:I1MWA2	InterPro:IPR036388
EnsemblPlants:KRH04862	ProteinID:KRH04862	ProteinID:KRH04862.1	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	UniParc:UPI000233E6B8	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:27558349..27565613

Molecular Weight (calculated)

62511.8 Da

IEP (calculated)

10.085

GRAVY (calculated)

-0.354

Length

551 amino acids

Sequence
(BLAST)

001: MGLGFGFGLN PRLRYCLLLH TPHSFTNSPL CLSPSSAGVR ETCFNFTRLS FPSTFYEEGE ALQKDFGRVF AFSSSALETL ENDSLGREET QVNKGKRSLS
101: SVHKMIDNTQ MPFGEVSTVS KKFESFRAQH FRLLMENLCV LEETFVDSEA LRLEKAIILQ LGKLGALELF NVCLSRSLGT SLVSNYADKV DDYKDKVVVQ
201: SSKKKENKTR RKREFVSTAV SSQSLTLKAN QEDLLGFSAS LVKRAPNTKN KRILVAKREA EMSKGVKVLA ELEKIRTAIE EDTKRVASLS TWAEASGVDE
301: KVLQKLLHRG YYCQDELIRS TRSLVLYLAR KYRGMGIALD DLLQAGYVGV LQGAERFDST RGYKFSTYVQ YWIRKSILRV VARYARGIVI PWSLNRAINQ
401: IQKARKAMKS THKKCPDDYE IAKMTGLSLD KIKSASNCLR IVASIDQKVG DYLGVEYMEL LPDATIESPE DAVMKQHMRK DVHDLLKGLN LRERKILTLR
501: FGLNDNQPRS LQDIGTLFKV SKERIRKIEK KALTKLKNEA TISKLHYYLD L

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.