Factsheet for Os05t0589200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G467100.1	Wheat	plastid	73.06	59.58
TraesCS1A01G431600.2	Wheat	plastid	72.63	59.12
TraesCS1D01G440900.1	Wheat	plastid	73.49	59.0
EES18778	Sorghum	plastid	67.89	53.39
Zm00001d039181_P001	Maize	nucleus	60.99	50.09
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	41.81	34.04
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	26.29	29.54
VIT_04s0008g00600.t01	Wine grape	plastid	33.84	27.99
Solyc08g065970.2.1	Tomato	nucleus	30.17	25.41
PGSC0003DMT400065483	Potato	mitochondrion	30.17	25.23
KRH04862	Soybean	mitochondrion	29.31	24.68
Bra014857.1-P	Field mustard	nucleus, plastid	26.29	22.3
AT3G53920.1	Thale cress	plastid	27.16	22.07
Os11t0448400-02	Rice	nucleus	18.97	20.8
CDX76185	Canola	plastid	26.29	18.21
CDY13153	Canola	plastid	26.08	18.01
Os03t0271100-01	Rice	mitochondrion	20.91	17.96
Os08t0163400-01	Rice	nucleus	15.73	17.51
Os08t0242800-01	Rice	plastid	18.75	15.21
Os05t0586600-01	Rice	plastid	8.41	10.99
PGSC0003DMT400010456	Potato	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	ProteinID:BAF18394.2	ProteinID:BAS95609.1	GO:GO:0001053
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:2000142	InterPro:IPR036388
EnsemblPlantsGene:Os05g0589200	EnsemblPlants:Os05t0589200-01	PFAM:PF04539	PFAM:PF04542	PANTHER:PTHR30603	PANTHER:PTHR30603:SF13
UniProt:Q0DFH9	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	UniParc:UPI0001B66ECF	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

SIGMA FACTOR 3RNA polymerase sigma factor, region 2 domain containing protein. (Os05t0589200-01)

Coordinates

chr5:+:29341476..29344660

Molecular Weight (calculated)

51921.6 Da

IEP (calculated)

10.285

GRAVY (calculated)

-0.437

Length

464 amino acids

Sequence
(BLAST)

001: MGLQMMRGRP CAPCCSSSSS SSSSSSSSWM PSKHPHAPLS RRKISSESLR ALALHLLPKR RKYQNGDISR ISASSSGVLE ITENKSNNKA DAERKILDDA
101: LDRKPQIDWV EEDISSWMDK SYTSSNLEYN LLMQNIQVLE SSLAGKDLVR LERDILVHIE RLGALKSFNA SISRATLTQT YELEFSLPGD IIKLDPEIPL
201: EEQNDVVIVR SGKSQERKLK RMKASEKGSR VSVKTPSRKS KKSSSSQFIA EWKNYPGRRR SIVREQSALL VTIKECANLE KIRENLLKDG SEVSHASWAK
301: AAGIDEALLR SRLQEGYCCR ERLLVTTEWL VKYIAKTYAG MGTAFEDLLQ AGKMGVLNGA EKFDSQKGCK FSTYVKYWIR KAMLALLAEN SGVIQLPARM
401: EGIIRKVREA RRAIRYNTGR NPPDAEIAAL IGVSVANVRL ARKCSRRVVS LYTEIGVGQN AKFV

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.