CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67575	Canola	cytosol	12.05	98.78
CDX73516	Canola	cytosol	12.05	98.78
CDY59157	Canola	cytosol	12.05	98.78
CDY54028	Canola	cytosol	12.05	98.78
CDX76185	Canola	plastid	93.75	94.03
AT3G53920.1	Thale cress	plastid	69.49	81.79
PGSC0003DMT400010456	Potato	nucleus	4.76	46.38
PGSC0003DMT400065483	Potato	mitochondrion	37.2	45.05
Solyc08g065970.2.1	Tomato	nucleus	36.61	44.65
VIT_04s0008g00600.t01	Wine grape	plastid	37.05	44.38
KRH04862	Soybean	mitochondrion	35.27	43.01
KRH16276	Soybean	golgi, mitochondrion, nucleus, plastid	24.4	39.71
GSMUA_Achr4P01060_001	Banana	golgi, mitochondrion, nucleus, plastid	29.61	34.91
TraesCS1A01G431600.2	Wheat	plastid	24.7	29.12
TraesCS1B01G467100.1	Wheat	plastid	24.4	28.82
Zm00001d039181_P001	Maize	nucleus	24.11	28.67
TraesCS1D01G440900.1	Wheat	plastid	24.55	28.55
CDX79708	Canola	endoplasmic reticulum, extracellular	6.25	28.19
EES18778	Sorghum	plastid	23.96	27.29
Os05t0589200-01	Rice	plasma membrane	18.01	26.08
CDY66142	Canola	nucleus	13.1	26.04
CDY09826	Canola	plastid	15.03	24.11
CDX91100	Canola	plastid	14.29	23.47
CDX85630	Canola	plastid	14.14	23.28
CDX93555	Canola	plastid	19.49	22.86
CDX95052	Canola	plastid	19.64	22.64
CDY31138	Canola	plastid	18.9	22.16
CDX97496	Canola	plastid	18.6	21.89
CDY18468	Canola	plastid	15.48	19.12
CDY19846	Canola	nucleus	13.24	18.24
CDX87140	Canola	plastid	13.24	17.69
CDY52962	Canola	nucleus	12.35	17.29
CDY56127	Canola	nucleus	12.5	17.11
CDX80416	Canola	nucleus	13.69	16.4
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	13.54	15.5

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	MapMan:17.1.3.1.23	Gene3D:3.30.1230.20	GO:A0A078FLN3
UniProt:A0A078FLN3	EnsemblPlants:CDY13153	ProteinID:CDY13153	ProteinID:CDY13153.1	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139
GO:GO:0006351	GO:GO:0006352	GO:GO:0006355	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:0019538	GO:GO:2000142	EnsemblPlantsGene:GSBRNA2T00071013001	InterPro:IPR036388	InterPro:IPR038579	PFAM:PD006584
PFAM:PF01249	PFAM:PF04542	PFAM:PF04545	PIRSF:PIRSF000767	PRINTS:PR00046	ScanProsite:PS00996
PANTHER:PTHR30603	PANTHER:PTHR30603:SF13	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r4
InterPro:RNA_pol_sigma_SigB/C/D/F	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	InterPro:Ribosomal_S21e	InterPro:Ribosomal_S21e_CS	InterPro:Ribosomal_S21e_sf
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI0004EF0B05	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

BnaC04g26820DRNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:A0A078FLN3]

Coordinates

chrLK032032:-:31714..35784

Molecular Weight (calculated)

76241.2 Da

IEP (calculated)

10.265

GRAVY (calculated)

-0.456

Length

672 amino acids

Sequence
(BLAST)

001: MASFNSFPIP KQIVRSSSSS SSASRPRILV RSSMASTNSM LVFVPPHPLI KHWLSLLRCG QTPPLPFFVR IASRWSFLSS LKEDTTFHLR DHPLKACGCA
101: SATAENVYVE LKDPKEYIGV GVVGEQMSSS SSEKVNLSRS MLQYNLLGKN LLALEQTFVA LESLRMERDI MLQMRKLGAT ELFNTCLSRS RASSTTSCLP
201: DTGTPELVDT TEEQQTFVPS TRKLRKKARR SSLMTGNDDQ GSRTTWEGID VPRVRKPSKY RKKRERISRN EAEMSQGVKI VADMERIRTK LEEESGKVAS
301: MSCWAEAAGM NEKLLMRNLH FGWYCRDELV KCTRSLVLFL ARNYRGLGIA HEDLIQAGYV GVLQGAERFD HTRGYKFSTY VQYWIRKSMS MMVSRHARGV
401: HIPASIIRTM SQIQKARKTL KTSQGIKYPA DEEISKLTGY SLKKIRAANQ CLKVVGSIDK KVGDCFTTKF LEFTPDTTME SPEEAVMRQS ARREVHNLIE
501: GLEAREKQVM VLRYGLQDYR PKSLEEIGKL LRVSKEGIRK IERRAMAKLR DQPKADNLRY YLNHEGINTA YASRPPHVRI TQNRFFQAII MQNEEGVVTE
601: LYIPRKCSAT NRLITSKDHA SVQLNIGHLD ADGIYTGQFT TLALCGFVRA QGDADSGVDR LWQKKKVETK QL

Best Arabidopsis Sequence Match ( AT3G53920.1 )
(BLAST)

001: MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN
101: DSLKACGCAS VSPYTAQNNV YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK LGAAELFKTC LSRYRGSSIT
201: SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301: ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV
401: SRHARGVHIP SSIIRTINHI QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF TPDTTMESPE EAVMRQSARR
501: DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q

Arabidopsis Description

SIGCRNA polymerase sigma factor sigC [Source:UniProtKB/Swiss-Prot;Acc:O24621]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.