CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026466.1-P	Field mustard	nucleus	97.95	98.35
CDX87140	Canola	plastid	94.88	92.05
AT5G24120.3	Thale cress	nucleus	86.68	81.82
CDX80416	Canola	nucleus	86.89	75.58
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	86.27	71.72
KRH53442	Soybean	plastid	63.52	61.14
VIT_16s0050g02520.t01	Wine grape	plastid	64.75	61.0
PGSC0003DMT400023432	Potato	plastid	63.93	60.47
KRH64502	Soybean	plastid	62.91	59.15
Solyc03g007370.2.1	Tomato	plastid	62.09	58.84
KRH18145	Soybean	mitochondrion, nucleus	61.27	58.4
KRH16520	Soybean	mitochondrion, nucleus	61.27	58.4
GSMUA_Achr7P24590_001	Banana	plastid	58.4	56.44
EES18781	Sorghum	plastid	49.18	47.9
Zm00001d039194_P001	Maize	plastid	48.77	47.89
TraesCS1A01G426700.1	Wheat	plastid	48.16	47.57
TraesCS1D01G436500.1	Wheat	plastid	47.95	47.37
TraesCS1B01G461600.1	Wheat	plastid	47.75	47.36
Os05t0586600-01	Rice	plastid	31.15	42.82
CDY66142	Canola	nucleus	18.85	27.22
CDX79708	Canola	endoplasmic reticulum, extracellular	6.56	21.48
CDY52962	Canola	nucleus	20.9	21.25
CDY56127	Canola	nucleus	21.11	20.98
CDY31138	Canola	plastid	23.77	20.24
CDX97496	Canola	plastid	23.57	20.14
CDX93555	Canola	plastid	23.57	20.07
CDX95052	Canola	plastid	23.57	19.73
CDY18468	Canola	plastid	21.72	19.49
CDY09826	Canola	plastid	16.6	19.33
CDX85630	Canola	plastid	15.98	19.12
CDX91100	Canola	plastid	15.98	19.07
CDX76185	Canola	plastid	18.44	13.43
CDY13153	Canola	plastid	18.24	13.24
CDY59157	Canola	cytosol	0.0	0.0
CDY54028	Canola	cytosol	0.0	0.0
CDX73516	Canola	cytosol	0.0	0.0
CDX67575	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	GO:A0A078G3B9	UniProt:A0A078G3B9	EnsemblPlants:CDY19846
ProteinID:CDY19846	ProteinID:CDY19846.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142
EnsemblPlantsGene:GSBRNA2T00009610001	InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046
PANTHER:PTHR30603	PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
UniParc:UPI0004EDF261	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaA09g04990DBnaA09g04990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3B9]

Coordinates

chrLK032100:+:658160..661404

Molecular Weight (calculated)

55954.4 Da

IEP (calculated)

10.634

GRAVY (calculated)

-0.582

Length

488 amino acids

Sequence
(BLAST)

001: MKQNLIGRRI SDTAKLPSIV AFKADESTNS SLIVPPEQVS EKQKEKRVVT RRKPSKDQNS APLGLDYNEA AARLESIYKL SPPATSLEED VIDASKGKVS
101: RRRKRKEGGG GEEKKVVVRS NVKKEKRLNL DKRIALKRNV QEKPVIIASA QKKVTKRQQE EEKIERLVRD YSASNDVVSL DWKKMKIPPV LSSTEHTWLF
201: KLMQPMKALL EVKDELQKSL GREPREAEIA GEINMSLAEV KMKIKVGKAA RNKLIKHNLR LVLFVMNKYF QDFTNGPKFQ DLCQAGMRGL ITAIDRFEPK
301: RKFRLSTYGL FWIRHAIIRS MTTSNFTRVP FGLESVRVEI YKAKMELLFE LGRLPTEEEV VERLKISPER YREVLRAAKP VYSLNTKHSV TQEEFINGIT
401: DVDGVGADNR RQPALLRLAL DDVLDSLKPK ESLVIRQRYG LDGKGDRTLG EIAGNLNISR EMVRKHEVKA LMKLKHQARV DYLRQYII

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.