Factsheet for VIT_16s0050g02520.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023432	Potato	plastid	71.04	71.32
KRH18145	Soybean	mitochondrion, nucleus	69.5	70.31
KRH16520	Soybean	mitochondrion, nucleus	68.73	69.53
Solyc03g007370.2.1	Tomato	plastid	69.11	69.51
KRH53442	Soybean	plastid	67.57	69.03
KRH64502	Soybean	plastid	66.8	66.67
CDX87140	Canola	plastid	63.51	65.41
CDY19846	Canola	nucleus	61.0	64.75
GSMUA_Achr7P24590_001	Banana	plastid	63.13	64.75
Bra026466.1-P	Field mustard	nucleus	60.62	64.61
AT5G24120.3	Thale cress	nucleus	63.9	64.02
Bra009735.1-P	Field mustard	plastid	61.78	62.75
CDX80416	Canola	nucleus	61.39	56.68
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	61.58	54.34
Zm00001d039194_P001	Maize	plastid	48.07	50.1
EES18781	Sorghum	plastid	48.46	50.1
TraesCS1A01G426700.1	Wheat	plastid	46.91	49.19
TraesCS1D01G436500.1	Wheat	plastid	46.91	49.19
TraesCS1B01G461600.1	Wheat	plastid	46.72	49.19
Os05t0586600-01	Rice	plastid	29.34	42.82
VIT_13s0064g00190.t01	Wine grape	nucleus	15.25	24.76
VIT_08s0040g01560.t01	Wine grape	plastid	23.55	21.75
VIT_15s0024g00640.t01	Wine grape	plastid	22.97	20.7
VIT_04s0008g00600.t01	Wine grape	plastid	19.3	17.83
VIT_16s0039g00660.t01	Wine grape	plastid	19.69	17.65

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	EntrezGene:100250120	wikigene:100250120	MapMan:15.6.2.1	ProteinID:CBI22546
ProteinID:CBI22546.3	UniProt:E0CUJ7	EMBL:FN595243	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009553
GO:GO:0009628	GO:GO:0009658	GO:GO:0009987	GO:GO:0010114	GO:GO:0010207	GO:GO:0010218
GO:GO:0015979	GO:GO:0016043	GO:GO:0016987	GO:GO:0045893	GO:GO:0071472	GO:GO:0071483
GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	EntrezGene:LOC100250120	wikigene:LOC100250120	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like
SUPFAM:SSF88659	SUPFAM:SSF88946	TIGR:TC69122	TIGR:TC70103	TIGRFAMs:TIGR02937	UniParc:UPI00015CCD40
ArrayExpress:VIT_16s0050g02520	EnsemblPlantsGene:VIT_16s0050g02520	EnsemblPlants:VIT_16s0050g02520.t01	unigene:Vvi.2394	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002268709
RefSeq:XP_002268709.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:+:19488875..19492368

Molecular Weight (calculated)

58938.8 Da

IEP (calculated)

10.534

GRAVY (calculated)

-0.494

Length

518 amino acids

Sequence
(BLAST)

001: MGVVTVSSSA SASRTPFGLN AKFSNHQTPL RRPLVLAFKA DKAKNIALVT PHEPIPLPIE TSKDHKKRLR RASKPSKRVK AVSTDEVSPC SVELDYNEAA
101: AKLENIYKLS PATDVSEAED LERVVRRGRQ RRKRVTLADD KAEKEVSDNV VRIHNKKPKR LSLEKRIALS KMKQEKAVAS IQKKRDSKNE DENIDVLVRE
201: YSASTDLVSL DWKKMKIPPV LPPSEHAWLF KLMQPMKGLL EVKDNLQKDL GREPTDGELA EAMSMSAVQV RRHMEVGQAA RNKLIKHNLR LVLFVINKYF
301: QEFANGPKFQ DLCQAGVKGL ITAIDRFEPK RSFRLSTYGL FWIRHAIMRS MTLSSFTRVS FGLESVRVEI QRAKLELLFK LQRLPTEEEI IEKVGISPER
401: YHEVMRASKS VLSLHARHAT TQEEYINGIT DVEGVGGDRG RQLALLRLAL DDVLDSLKPK ESLVMRQRYG LDGKGDRTLG EIAGNLSISR EMVRKHEVKA
501: LMKLKHPARV DYLRQYIF

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.