CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039194_P001	Maize	plastid	87.62	88.33
TraesCS1A01G426700.1	Wheat	plastid	72.26	73.28
TraesCS1D01G436500.1	Wheat	plastid	72.26	73.28
TraesCS1B01G461600.1	Wheat	plastid	71.86	73.17
Os05t0586600-01	Rice	plastid	39.92	56.34
GSMUA_Achr7P24590_001	Banana	plastid	50.9	50.49
KRH53442	Soybean	plastid	49.9	49.31
CDY19846	Canola	nucleus	47.9	49.18
PGSC0003DMT400023432	Potato	plastid	50.5	49.03
Bra026466.1-P	Field mustard	nucleus	47.31	48.77
VIT_16s0050g02520.t01	Wine grape	plastid	50.1	48.46
Solyc03g007370.2.1	Tomato	plastid	49.7	48.35
CDX87140	Canola	plastid	48.1	47.91
KRH64502	Soybean	plastid	49.1	47.4
AT5G24120.3	Thale cress	nucleus	48.1	46.62
KRH16520	Soybean	mitochondrion, nucleus	47.31	46.29
KRH18145	Soybean	mitochondrion, nucleus	47.11	46.09
Bra009735.1-P	Field mustard	plastid	46.31	45.49
CDX80416	Canola	nucleus	46.11	41.18
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	46.11	39.35
EES13412	Sorghum	plastid	20.96	21.0
EER95113	Sorghum	plastid	20.56	19.51
OQU83379	Sorghum	plastid	20.56	19.18
KXG37075	Sorghum	plastid	20.96	18.92
EES18778	Sorghum	plastid	19.96	16.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	EntrezGene:8066537	UniProt:C5YWL3	EnsemblPlants:EES18781
ProteinID:EES18781	ProteinID:EES18781.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142	InterPro:IPR036388
PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF4
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	EnsemblPlantsGene:SORBI_3009G250400	SUPFAM:SSF88659	SUPFAM:SSF88946	unigene:Sbi.8779	TIGRFAMs:TIGR02937
UniParc:UPI0001A88824	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002440351.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:58569482..58571936

Molecular Weight (calculated)

57351.5 Da

IEP (calculated)

10.417

GRAVY (calculated)

-0.825

Length

501 amino acids

Sequence
(BLAST)

001: MTSTVTTPSR PLAAGTRPRR SWPAVLSLSK GSSGPRRRRP PSTSCAALAS PDKQRTANKL PVSSRKQQQQ EEEEEVRATD YNEVAAALES IYKLSPAVEV
101: DEENERHGGH DDDDEGGKKA KKKRKSRVAG RSTVIVKSRR RRRGRRMDLG KRVEMKSAAV SREGDEDDEG EREREFEEML LREHSVSTDM GSLDWKRMKI
201: PPVLTSSQSA RLFKTMQPMK AIFEVQESLR EELQRDPTDA ELAEATGMTV HQLRRRLDVG RAARNKLIKH NLRLVPYAIN KYYPDMGTDE RFDDLCQAGA
301: NGLITAIDRF EPKRGFRIST YALFWIRHSI VRAMTLSSFT RFPFAMESER QEIGKAREEL AFELGRPATD EEVRRKVGIS PQRYRDVLRM TRPTYSLHAR
401: NRVTQEELIN EVTDDDAIGV DAGGRHNTLL RLAIDDLLDS LKPKESLVIR QRFGLDGRGK RTLSEIAGNL SISREMVRKY ELKALMKLKH PTRVEYLRRY
501: M

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.