Factsheet for Solyc03g007370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023432	Potato	plastid	94.56	94.38
VIT_16s0050g02520.t01	Wine grape	plastid	69.51	69.11
KRH53442	Soybean	plastid	65.63	66.67
KRH18145	Soybean	mitochondrion, nucleus	64.08	64.45
KRH64502	Soybean	plastid	64.47	63.97
KRH16520	Soybean	mitochondrion, nucleus	63.5	63.87
GSMUA_Achr7P24590_001	Banana	plastid	61.94	63.17
CDX87140	Canola	plastid	61.55	63.02
Bra026466.1-P	Field mustard	nucleus	58.84	62.35
CDY19846	Canola	nucleus	58.84	62.09
AT5G24120.3	Thale cress	nucleus	60.78	60.54
Bra009735.1-P	Field mustard	plastid	59.42	60.0
CDX80416	Canola	nucleus	59.42	54.55
CDX88078	Canola	cytosol, mitochondrion, nucleus, vacuole	59.22	51.96
EES18781	Sorghum	plastid	48.35	49.7
Zm00001d039194_P001	Maize	plastid	47.96	49.7
TraesCS1A01G426700.1	Wheat	plastid	47.38	49.39
TraesCS1B01G461600.1	Wheat	plastid	46.8	48.98
TraesCS1D01G436500.1	Wheat	plastid	46.8	48.79
Os05t0586600-01	Rice	plastid	29.71	43.1
Solyc06g072710.2.1	Tomato	nucleus	19.61	20.0
Solyc09g008040.2.1	Tomato	nucleus, plastid	21.36	19.54
Solyc03g097320.2.1	Tomato	nucleus, plastid	19.22	19.45
Solyc01g081490.2.1	Tomato	nucleus	23.11	19.41
Solyc01g087690.1.1	Tomato	nucleus	15.34	18.76
Solyc08g065970.2.1	Tomato	nucleus	17.67	16.52

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009553
GO:GO:0009628	GO:GO:0009658	GO:GO:0009987	GO:GO:0010114	GO:GO:0010207	GO:GO:0010218
GO:GO:0015979	GO:GO:0016043	GO:GO:0016987	GO:GO:0045893	GO:GO:0071472	GO:GO:0071483
GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	UniProt:K4BEG0	PFAM:PF04539	PFAM:PF04542
PFAM:PF04545	PRINTS:PR00046	PANTHER:PTHR30603	PANTHER:PTHR30603:SF4	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	EnsemblPlantsGene:Solyc03g007370.2	EnsemblPlants:Solyc03g007370.2.1	TIGRFAMs:TIGR02937	UniParc:UPI0002767F79	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G24120) UniProtKB/Swiss-Prot;Acc:Q9ZNX9]

Coordinates

chr3:-:1915174..1919474

Molecular Weight (calculated)

58963.6 Da

IEP (calculated)

10.591

GRAVY (calculated)

-0.615

Length

515 amino acids

Sequence
(BLAST)

001: MGVVTVSSSA SRSPLGLSSR FSARLCPLKR PVIVSFKKDI TKNTTLVSPK ESISSPIETS KENEKRSRRV SKRTERVHAV TIEAPPSTLE LDYSEAAAKL
101: ESIYKRSLET ASPNTEVKDH LVKRRPRTRK RIVESDEEAK KEVVDNVVKN RRKKSKRLNL DQRIALLKNK EGKMLASSER RKLNEDTEDE KIDKLVREYS
201: GATDLASLDW KKMKIPPVLP SSEHTWLFKL MQPMKAILQV KENLQNDLGR EPTDGEVAEA TNMDASELRK KLEAGRAARN KLIKHNLRLV LFVMNKYFQD
301: FANASRFQDL CQAGVKGLIT AIDRFEPNRK FRLSTYGLFW IRHAIIRYMT TSSFTKVPFG LESIRVEIQK AKLELLFELQ RIPTDDEIIK RVGFSPERYH
401: EVMKVSKPIF SLHARNKTTQ EELINGITDV DGVDGDKRKQ PALLRLALDD VLDSLKPKES LVIRQRYGLD GKGDRTLGEI AGNLNISREM VRKHEVKALM
501: KLKHPTRVDY VRRPV

Best Arabidopsis Sequence Match ( AT5G24120.1 )
(BLAST)

001: MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA
101: AARLESIYKL SPATTTLVED DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD KKVTKRQQEE EKIERLVRDY
201: SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH
301: EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY
401: REVLRAAKPV LSLNSKHSVT QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE IAGNLNISRE MVRKHEVKAL
501: MKLKHQARVD YLRQYIV

Arabidopsis Description

SIGERNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.