Factsheet for Solyc03g097320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072710.2.1	Tomato	nucleus	75.83	76.44
PGSC0003DMT400068109	Potato	nucleus	83.89	70.0
CDY52962	Canola	nucleus	65.82	69.79
KRH23963	Soybean	plastid	68.76	69.58
KRH39837	Soybean	plastid	68.76	69.58
Bra008513.1-P	Field mustard	nucleus	66.8	69.11
CDY56127	Canola	nucleus	66.6	69.04
AT1G64860.1	Thale cress	nucleus	65.42	66.33
GSMUA_Achr1P10700_001	Banana	nucleus	53.63	64.54
GSMUA_Achr11P...	Banana	nucleus	57.76	64.05
VIT_16s0039g00660.t01	Wine grape	plastid	69.55	61.25
HORVU7Hr1G069520.2	Barley	nucleus	35.95	61.0
Os08t0163400-01	Rice	nucleus	45.78	55.88
EES13412	Sorghum	plastid	52.46	53.4
Zm00001d049494_P001	Maize	plastid	51.47	51.98
Zm00001d024507_P001	Maize	plastid	45.19	51.11
TraesCS7B01G184800.1	Wheat	nucleus, plastid	50.88	50.68
TraesCS7D01G292000.1	Wheat	plastid	50.88	50.68
TraesCS7A01G297900.2	Wheat	plastid	50.29	50.2
Solyc01g087690.1.1	Tomato	nucleus	21.02	25.42
Solyc09g008040.2.1	Tomato	nucleus, plastid	24.75	22.38
Solyc01g081490.2.1	Tomato	nucleus	24.95	20.72
Solyc03g007370.2.1	Tomato	plastid	19.45	19.22
Solyc08g065970.2.1	Tomato	nucleus	19.06	17.6

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:2000142	InterPro:IPR036388	UniProt:K4BJE9	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545
PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70
InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	EnsemblPlantsGene:Solyc03g097320.2	EnsemblPlants:Solyc03g097320.2.1	TIGRFAMs:TIGR02937	UniParc:UPI00027681B8	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:59640047..59644433

Molecular Weight (calculated)

57579.3 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.477

Length

509 amino acids

Sequence
(BLAST)

001: MMATTAVIGL SAGKRLLSSS FYYSDLNEKL SCSSDHSLPC HQVPTVKNVI SAKKSSDYSP SCVSSRKLQS VKALKEHVDI ASDPSDVQSW FERFEQLQNE
101: SDDEEDDSVE VLLLLQKSML EKQWNLSAEE TLTASTQRKK NCKKMHIACS GTSARRRRMD SRQRVLAQKS SATPISATKP LRSILGPDLL QNRLKGYVKG
201: IVSEELLTHT EVLQLSKKIK VGLHVEEQKS RLKERLGCEP SDDQLAVSLK MSRTDLQSTL IECSLARERL SMSNVRLVMS IAQRYDNMGA EMADLVQGGL
301: IGLLRGIEKF DPSKGYKIST YVYWWIRQGV SRTLVENSRT LRLPTHLHER LGLIRNAKMR LEEKGINPSV NNIAASLNMS QKKVRNATEA SSKVYSLDRE
401: VFPSLNGLPG TTLHSYIADN HLENNPWHGV DVWALKDEVN NLISSTLRER EREIIRLYYG LDSECLTWED ISKRIGLSRE RVRQVGLVAL EKLKHAARKR
501: RLDAMLIKQ

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.