CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049494_P001	Maize	plastid	91.4	90.67
Zm00001d024507_P001	Maize	plastid	81.2	90.22
HORVU7Hr1G069520.2	Barley	nucleus	51.6	86.0
Os08t0163400-01	Rice	nucleus	70.2	84.17
TraesCS7D01G292000.1	Wheat	plastid	78.0	76.32
TraesCS7A01G297900.2	Wheat	plastid	77.6	76.08
TraesCS7B01G184800.1	Wheat	nucleus, plastid	77.4	75.73
GSMUA_Achr1P10700_001	Banana	nucleus	50.6	59.81
GSMUA_Achr11P...	Banana	nucleus	52.2	56.86
KRH23963	Soybean	plastid	55.0	54.67
KRH39837	Soybean	plastid	53.8	53.48
PGSC0003DMT400069555	Potato	nucleus	53.6	53.07
CDY52962	Canola	nucleus	50.4	52.5
Solyc06g072710.2.1	Tomato	nucleus	53.0	52.48
Solyc03g097320.2.1	Tomato	nucleus, plastid	53.4	52.46
AT1G64860.1	Thale cress	nucleus	52.2	51.99
CDY56127	Canola	nucleus	51.0	51.93
Bra008513.1-P	Field mustard	nucleus	51.0	51.83
VIT_16s0039g00660.t01	Wine grape	plastid	53.0	45.85
PGSC0003DMT400068109	Potato	nucleus	46.8	38.36
OQU83379	Sorghum	plastid	22.8	21.23
KXG37075	Sorghum	plastid	23.4	21.08
EER95113	Sorghum	plastid	22.2	21.02
EES18781	Sorghum	plastid	21.0	20.96
EES18778	Sorghum	plastid	19.8	16.78

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	MapMan:15.6.2.1	EntrezGene:8080867	UniProt:C5YHG2	EnsemblPlants:EES13412
ProteinID:EES13412	ProteinID:EES13412.1	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009416	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0015979
GO:GO:0016043	GO:GO:0016987	GO:GO:0071461	GO:GO:0071482	GO:GO:0080005	GO:GO:2000142
InterPro:IPR036388	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715
PANTHER:PTHR30603	PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	EnsemblPlantsGene:SORBI_3007G053800	SUPFAM:SSF88659	SUPFAM:SSF88946
unigene:Sbi.69	TIGRFAMs:TIGR02937	UniParc:UPI0001A874B7	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002443917.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:5434970..5438674

Molecular Weight (calculated)

55965.1 Da

IEP (calculated)

9.895

GRAVY (calculated)

-0.438

Length

500 amino acids

Sequence
(BLAST)

001: MTATPAMIGL SAGKRLLATS FGNTDLAPPD AHPSLQFAPA APKLTVVAHR ASASSSSSSS SPAGHARAHA IRALRNHSAP ALAPPLPLPL PPPPAADPAP
101: ELDSEFEFEL ESSLEAIVLL QRSMLEKQWQ LPFEDEDEDD ERLTKAAVVV ARSGVSARQR RMSGRRRGPG RKSVTVSPEL MQSRNRIYLR GTVSKDLLTH
201: KQVIQLSRKI KDGIWLQHQR SKLKEKLGNE PSYKQLAQSL HISPPELRAR MRESFLAREM LTMSNIRLVI SIAQKYDNLG VELADLIQGG LIGLLRGIEK
301: FDASRGFRIS TYVYWWIRQG VSRALADNSK AFRLPTYLHE RLIAIRGAKY ALEDQGIAPT VENIAESLNI SEKKVHNATE AVNKVLSLDQ QAFPSLNGLP
401: GDTLHSYIED QNVANDPWHG FEERYLKEEV NNLINSTLNE RERDIIRLYH GIGKQCHTWE DISRQFGLSR ERVRQVGLVA MEKLKHAARR KHLDALLEEY

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.