Factsheet for VIT_16s0039g00660.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23963	Soybean	plastid	61.94	71.17
CDY52962	Canola	nucleus	59.0	71.04
KRH39837	Soybean	plastid	61.76	70.97
Bra008513.1-P	Field mustard	nucleus	59.52	69.92
CDY56127	Canola	nucleus	59.34	69.86
Solyc03g097320.2.1	Tomato	nucleus, plastid	61.25	69.55
AT1G64860.1	Thale cress	nucleus	59.69	68.73
PGSC0003DMT400069555	Potato	nucleus	59.86	68.51
Solyc06g072710.2.1	Tomato	nucleus	59.52	68.12
GSMUA_Achr1P10700_001	Banana	nucleus	47.92	65.48
GSMUA_Achr11P...	Banana	nucleus	50.52	63.62
HORVU7Hr1G069520.2	Barley	nucleus	31.49	60.67
Os08t0163400-01	Rice	nucleus	41.7	57.79
EES13412	Sorghum	plastid	45.85	53.0
Zm00001d024507_P001	Maize	plastid	40.83	52.44
TraesCS7D01G292000.1	Wheat	plastid	45.85	51.86
Zm00001d049494_P001	Maize	plastid	45.16	51.79
PGSC0003DMT400068109	Potato	nucleus	54.5	51.64
TraesCS7A01G297900.2	Wheat	plastid	45.5	51.57
TraesCS7B01G184800.1	Wheat	nucleus, plastid	45.33	51.27
VIT_13s0064g00190.t01	Wine grape	nucleus	18.51	33.54
VIT_15s0024g00640.t01	Wine grape	plastid	23.53	23.65
VIT_08s0040g01560.t01	Wine grape	plastid	20.93	21.57
VIT_16s0050g02520.t01	Wine grape	plastid	17.65	19.69
VIT_04s0008g00600.t01	Wine grape	plastid	17.47	18.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.120.1810	EntrezGene:100256191	wikigene:100256191	MapMan:15.6.2.1	ProteinID:CCB50532
ProteinID:CCB50532.1	ncoils:Coil	UniProt:F6HE86	EMBL:FN595750	GO:GO:0001053	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987
GO:GO:0015979	GO:GO:0016043	GO:GO:0016987	GO:GO:0071461	GO:GO:0071482	GO:GO:0080005
GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	EntrezGene:LOC100256191	wikigene:LOC100256191	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF14
InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2
InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGR:TC61970	TIGRFAMs:TIGR02937	UniParc:UPI000210877F
ArrayExpress:VIT_16s0039g00660	EnsemblPlantsGene:VIT_16s0039g00660	EnsemblPlants:VIT_16s0039g00660.t01	unigene:Vvi.3158	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002264964
RefSeq:XP_002264964.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:+:332542..337573

Molecular Weight (calculated)

64849.9 Da

IEP (calculated)

9.169

GRAVY (calculated)

-0.405

Length

578 amino acids

Sequence
(BLAST)

001: MVFCMQSSNQ TQCPYQNSVI IFAKIKENPS LVSSNFPPTS SPPITISSFL SFTALFSSPL PLISIWVLQS HMMGTAAVIG LSAGNRLLAS SHHYSDVAEK
101: LSSYVNDVGF PHHPSPPPKN LISAKKPSNY TPSSNRSIQS MKALKEHVES ASAPSTADPD LSSSSSEVED EEYLVEAFLL LQKSMLEKQW NLSFVGTVVG
201: KEEEEEEEEE EEEDMGKKAR QKRREVTCSG TSARQRRISG RKRVMNEKSK SRVRAALGVE NRLKGYVKGV VSEELLTHAQ VVLLSNKIKA GLLLEDHKSR
301: LKERIGSEPT DEQVAASLRM SRAELQSKLI ECSLAREKLA MSNVRLVMSI AQRYDNMGAE MADLVQGGLI GLLRGIEKFD SSKGFKISTY VYWWIRQGVS
401: RALVENSRTL RLPSHLHERL SLIRNAKIRL EEKGITPSID RIAECLNMSQ KKVRNATEAI SKVFSLDREA FPSLNGLPGE TLHSYIADVR LENNPWHGVD
501: EWALKDEVNK LINTTLGERE RDIIRLYYGL DNECLTWEDI SKRIGLSRER VRQVGLVALE KLKNAARKGR MEAMLVKY

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.