Factsheet for PGSC0003DMT400068109

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097320.2.1	Tomato	nucleus, plastid	70.0	83.89
PGSC0003DMT400069555	Potato	nucleus	57.54	69.5
CDY52962	Canola	nucleus	49.51	62.92
CDY56127	Canola	nucleus	50.0	62.12
Bra008513.1-P	Field mustard	nucleus	50.0	61.99
KRH23963	Soybean	plastid	50.66	61.43
KRH39837	Soybean	plastid	50.49	61.23
AT1G64860.1	Thale cress	nucleus	48.52	58.96
GSMUA_Achr1P10700_001	Banana	nucleus	40.33	58.16
GSMUA_Achr11P...	Banana	nucleus	42.13	55.99
HORVU7Hr1G069520.2	Barley	nucleus	27.38	55.67
VIT_16s0039g00660.t01	Wine grape	plastid	51.64	54.5
Os08t0163400-01	Rice	nucleus	35.25	51.56
EES13412	Sorghum	plastid	38.36	46.8
Zm00001d049494_P001	Maize	plastid	37.7	45.63
TraesCS7B01G184800.1	Wheat	nucleus, plastid	37.05	44.23
TraesCS7D01G292000.1	Wheat	plastid	37.05	44.23
Zm00001d024507_P001	Maize	plastid	32.46	44.0
TraesCS7A01G297900.2	Wheat	plastid	36.72	43.92
PGSC0003DMT400017455	Potato	nucleus	12.95	28.83
PGSC0003DMT400010456	Potato	nucleus	2.79	24.64
PGSC0003DMT400055506	Potato	nucleus, plastid	19.02	19.93
PGSC0003DMT400079883	Potato	plastid	19.34	19.25
PGSC0003DMT400023432	Potato	plastid	16.07	18.99
PGSC0003DMT400065483	Potato	mitochondrion	14.43	15.86

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987	GO:GO:2000142
InterPro:IPR036388	UniProt:M1CIG2	PFAM:PF04542	PFAM:PF04545	EnsemblPlantsGene:PGSC0003DMG400026491	PGSC:PGSC0003DMG400026491
EnsemblPlants:PGSC0003DMT400068109	PRINTS:PR00046	ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF14	InterPro:RNA_pol_sigma-70_dom
InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659
SUPFAM:SSF88946	TIGRFAMs:TIGR02937	UniParc:UPI000295DC60	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

Sigma factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026491]

Coordinates

chr3:+:46376394..46384568

Molecular Weight (calculated)

69577.7 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.453

Length

610 amino acids

Sequence
(BLAST)

001: MENLRLKERL GCETSYYQLS LSLKLSRTDL RSTLIECSLA RERFSMSSIR LVMSIAQRYD NMGPEMTDLV RGGLVGLLHG IEKFDPSKGY KIPTYVYWWI
101: RQPPLHRYNQ GRATAVQYNE SHVMAHSTYN AANPLSAARN GASWVFIVVF FESNGRICSP RNVRRVYKSV NSLVIIASPS YVSSRKLQSV KALKEHIDIA
201: SDPSDVQSWF ERFEQLQNES DDEDDDSVEA FLLLQKSMLE KQWNLSAEET LTASPQHEKN CKKMHITCSG TTARRRRTDS RQRVLGPKSS ATPISATKPL
301: RSIIGPELLQ NRLKGYVKGV VSDELLTHTE VLQLSKKIQV GLHVEEQKSR LKDRLGCEPS DDQLALSLKM PRTDLQSTLI ECSLARERLS MSNVRLVMSI
401: AQRYDNMGAE MADLVQGGLI GLLRGIEKFD PSKGYKISTY VYWWIRQGVS RTLVENSRTL RLPTHLHERL GLIRNAKMRL EEKGITPSVN ASSKVYSLDR
501: EVFPSLNGLP GATLHSYIAD NHLENNPWHG VDTWALKDEV NNLISSSLRE REREIIRLYY GLDSECLTWE DISKRIGLSR ERVRQVGLVA LEKLKHAARK
601: RRLDAMLIKQ

Best Arabidopsis Sequence Match ( AT1G64860.1 )
(BLAST)

001: MATAAVIGLN TGKRLLSSSF YHSDVTEKFL SVNDHCSSQY HIASTKSGIT AKKASNYSPS FPSSNRHTQS AKALKESVDV ASTEKPWLPN GTDKELEEEC
101: YDDDDLISHS VEAILLLQKS MLEKSWNLSF EKAVSSEYPG KGTIRKKKIP VITCSGISAR QRRIGAKKKT NMTHVKAVSD VSSGKQVRGY VKGVISEDVL
201: SHVEVVRLSK KIKSGLRLDD HKSRLKDRLG CEPSDEQLAV SLKISRAELQ AWLMECHLAR EKLAMSNVRL VMSIAQRYDN LGAEMSDLVQ GGLIGLLRGI
301: EKFDSSKGFR ISTYVYWWIR QGVSRALVDN SRTLRLPTHL HERLGLIRNA KLRLQEKGIT PSIDRIAESL NMSQKKVRNA TEAVSKVFSL DRDAFPSLNG
401: LPGETHHSYI ADTRLENNPW HGYDDLALKE EVSKLISATL GEREKEIIRL YYGLDKECLT WEDISKRIGL SRERVRQVGL VALEKLKHAA RKRKMEAMIL
501: KN

Arabidopsis Description

SIGARNA polymerase sigma factor sigA [Source:UniProtKB/Swiss-Prot;Acc:O24629]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.