Factsheet for PGSC0003DMT400017455

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087690.1.1	Tomato	nucleus	98.54	64.13
VIT_13s0064g00190.t01	Wine grape	nucleus	64.6	55.49
Bra008807.1-P	Field mustard	plastid	51.82	34.98
AT5G13730.1	Thale cress	plastid	53.28	34.84
CDX85630	Canola	plastid	51.09	34.31
CDX91100	Canola	plastid	51.09	34.23
CDY09826	Canola	plastid	51.46	33.65
PGSC0003DMT400010456	Potato	nucleus	8.39	33.33
GSMUA_Achr4P18530_001	Banana	plastid	49.63	29.06
Bra023430.1-P	Field mustard	plastid	49.63	18.71
PGSC0003DMT400069555	Potato	nucleus	32.12	17.43
PGSC0003DMT400055506	Potato	nucleus, plastid	36.5	17.18
PGSC0003DMT400079883	Potato	plastid	36.86	16.48
PGSC0003DMT400065483	Potato	mitochondrion	32.12	15.86
PGSC0003DMT400023432	Potato	plastid	24.82	13.18
PGSC0003DMT400068109	Potato	nucleus	28.83	12.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	MapMan:15.6.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0016987
GO:GO:0071482	GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	UniProt:M1A8Y7	PFAM:PF04539
PFAM:PF04542	PFAM:PF04545	EnsemblPlantsGene:PGSC0003DMG402006783	PGSC:PGSC0003DMG402006783	EnsemblPlants:PGSC0003DMT400017455	PRINTS:PR00046
ScanProsite:PS00715	PANTHER:PTHR30603	PANTHER:PTHR30603:SF24	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2
InterPro:RNA_pol_sigma70_r3	InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946
TIGRFAMs:TIGR02937	UniParc:UPI00029676FF	InterPro:WH-like_DNA-bd_sf	:	:	:

Description

RNA polymerase sigma subunit SigD [Source:PGSC_GENE;Acc:PGSC0003DMG402006783]

Coordinates

chr1:+:65130372..65132031

Molecular Weight (calculated)

30945.8 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.354

Length

274 amino acids

Sequence
(BLAST)

001: MVEETSEIDL SSKQLAKAAG MSTQRLDKLL INAKESQKKI IQCYRGLVVS VAASYQGKGL SLQDLIQEGS IGLLHGAKKF NPKKGYKLST YAYWWIRQAI
101: SRAVANKSRV IRLPGSISEL VPKICNANTE LSRKLRRMPS YDEIAEALGM DVSTVRLVIE RNRAPISIDQ IVTSQGYMSL QNIISGPEDT TPEENVKRQM
201: MKQDLEKILH NVLCDREAKI LKLHFGLNGD NPQSFEEIGR VLKLSRERIR QINCTALSKL RESSMLDNFK MYIT

Best Arabidopsis Sequence Match ( AT5G13730.1 )
(BLAST)

001: MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN
101: AGVEAEAETI SVPVVGASRS GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL
301: AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK
401: KLRNVHNVND LKIYYSSSE

Arabidopsis Description

SIGDRNA polymerase sigma factor sigD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSL6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.